K04705

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04705

Determination of introduced cDNA(s)

  • J033088F06 - Rice Full-length cDNAs - Original: J033088F06

    full reading [+] show sequence

    Nucleotide sequence: J033088F06 - full reading 
    GAATAACAAG AAAAAAAAAC CAGCATAGCA AAGCAAGGGT TTAGGGCGGC 
    GGCGGCGGAT TCCGCGGCGG CCATGGCGAC GGCGGTGCGG CTCCTGCGAA 
    GGAGCCTGCG AGGGGGCGAG GCAGCACCTC GGTTCTTATC CGCTTCTCAA 
    AATTTGGTAC GACTAGTTGC AAACAACACC AGATCAGTTG ATGTTGGCCA 
    ACCAACACCC CGATCTCATC CTGAGTTATT AGCTGAAGGA GAGATTACAC 
    CAGGTATCAC TAGCGATGAG TACATCTTCA GAAGAAAAAA GCTTTTGGAG 
    GTTCTGCCAG AGAAGAGCTT GGCCATTATT GCGTCCGCAG AGCAGCAGAT 
    GATGACTGAT GTAGTGCCAT ACTCATTCAG ACAGAATGGT GATTACCTGT 
    ATATTACAGG TTGTGCACAA CCTGGTGGTG TGGCAGTTTT AAGTGAGGAA 
    ACTGGTCTGT GTATGTTCAT GCCAGATACA AGTAAGGAGG ATGTGGTCTG 
    GCAAGGTCAG ACAGCTGGAG TTGAGGCAGC TGAGAATTTC TTCAAAGCGG 
    ACAAAGCATT TCCACTTAGT GAGATGCAAA AGATCCTTCC TGAAATGATT 
    GAGCGGTCAA AAGTGGTATA TCACAATGTA AAGACACTTT CGCCATCTTA 
    TAAGAACTTG GATTCCTTTC GTAGGGCATC ACTCAATAAT AAAGTAAAAG 
    ATATTGCATA CTACACTGAT GAACTGCGGT GGATCAAGTC AAAATCAGAA 
    ATTGGGTTGA TGCGAGAATC AGCATCTATT GTTTCTCAGT CTCTTTTACA 
    AACGATGTTG CTATCTAGGA CCCATAGGGA GGAAAGCCAA CTGGCAGCTA 
    AGATCGAGTA TGAGTGCAAA ATGAGGGGTG CCCAAAGAAT GGCGTTCCAT 
    CCTGTAGTTG GTGGTGGAGC AAATGGCAGT GTAATACACT ACTCAAGAAA 
    TGACGGAAGG GTCAAAGCAG GTGAACTACT GCTCATGGAT GTTGGCTGTG 
    AGTATCATGG CTACCTTAGC GACCTGACTC GAACATGGCC ACCCTGTGGC 
    AGGTTTTCAC CTGCTCAGGA AGAACTATAC AGCCTGATAC TGGAGACAAA 
    TAAGGAATGC ATAAAGCTTT GTAAACCAGG CGCAAGCATT AACGAGATAC 
    ATAATCATTC GGTCAAGATG TTGATAAAGG GTTTCCAAGA ACTTGGAATT 
    TTAGAGAAGG GGAAATCCAT CCAATACAAT TATTTGAATC CAACAGCAAT 
    AGGTCACTCG TTAGGAATGG ATATTCATGA TTCCGTCAAG CTTAGCAAGG 
    ACAAACCCTT GGAGCCAGGA GTTATAATAA CGATCGAGCC CGGGGTTTAC 
    ATCCCACCGG TGCCAATACT GAAAGAGAAC GCCCCAGATA GGTACCGGGG 
    CATCGGAATT AGGATCGAGG ACGAGGTCCT CATCACCGAG TCTGGTCACG 
    AGGTCCTGAC GGCGTCGGTG CCGAAGGAGA TCTCTCACAT AACCACCCTT 
    ATGAACATGG GTAGTAACTC CATGATGGAT GCCCATGAGC TGAGGGCTGC 
    CTGCAGTTGA GAAGTTCAGA CAATGCTGTC CTGATGCATC ATCCCTCTTC 
    CCTCCAGCGA TCTTCGCATC CAAATTCCAA TTGACATTCA TTCTTCGTTA 
    AAGCTGAGAG ATGAATCGGG ATTATGAAGG CTCAAGTGGG GTTATGGTTT 
    TTGAGAAACC CGAACCACCC TGATCGTCTC AGGGCTGTAC GGGTTTTTCG 
    CTGGTTTTCA CGAGAAAAAC CAGCTGTTTT CAGTGTTTGC AATTTTTTTT 
    AGCTTTGTTA AGGACTGAAA TTTGTAACAT ACTACCTCAG ATTATGTACA 
    AATTCAGATG GTGACAGAAA CAAAAGCACG AAATTAGGGT CACAAGAAGC 
    CCCTGAAAGT

    Gene models with high sequence identity

    1. AT1G09300.1 [+] show detail - Metallopeptidase M24 family protein
      E-value: 3e-162; Score: 569.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.2e-35
    Gene3D Peptidase M24, structural domain 1.6e-64
    HMMPanther XAA-PRO DIPEPTIDASE APP(E.COLI) 3.1e-88
    HMMPanther Peptidase M24, structural domain 3.1e-88
    HMMPfam Peptidase M24, structural domain 6.9e-52
    HMMPfam Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal 7.3e-32
    superfamily Peptidase M24, structural domain 2e-60
    superfamily Creatinase/prolidase N-terminal domain 1.7e-32

    See the detailed result >

    AT1G09300.1

    Model type
    Protein coding
    Short Description
    Metallopeptidase M24 family protein
    Computational Description
    Metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1); Has 16476 Blast hits to 16448 proteins in 2755 species: Archae - 330; Bacteria - 11247; Metazoa - 589; Fungi - 576; Plants - 221; Viruses - 0; Other Eukaryotes - 3513 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR