K04706

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04706

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04706

Determination of introduced cDNA(s)

  • J013106M11 - Rice Full-length cDNAs - Original: J013106M11

    full reading [+] show sequence

    Nucleotide sequence: J013106M11 - full reading 
    GTAGCATGTT TAGTGTGGCG GAACAGCAGC AAGCTAAAGG TGATTGGATG 
    CTGAGAGTCA ACGGGAGGGT GAAGATTATG GATCAGACCA TGGTGGGGAT 
    GACATTGAAG ATAGCCTCCA AAGCCCACTT ATTTCTCGTC AAGCGACAAG 
    CGTGGAAGGA AAGGAGATCG CTGCACCTCA TGGCAGTATA ATGGGTGCTG 
    TGGGAAGAAG TAGTAGTCTC ATGCAGGGCG GGGAGGCAGT AAGCAGCATG 
    GGCATTGGTG GGGGATGGCA GTTGGCTTGG AAATGGACTG AGAGAGAAGG 
    TGCAGATGGC GAAAAAGAAG GTGGCTTCCA ACGTATCTAC TTGCATGAAG 
    AGGGTGTGAC AGGTGATCGC AGGGGCTCTA TACTGTCATT GCCTGGAGGT 
    GATGTTCCTC CTGGTGGTGA GTTCGTCCAG GCAGCTGCTC TTGTCAGCCA 
    ACCTGCTCTT TACTCTAAGG AATTGATGGA GCAACGCCTT GCTGGCCCTG 
    CTATGGTGCA TCCATCTCAG GCAGTTGCTA AAGGTCCAAA ATGGGCAGAC 
    TTATTCGAAC CTGGAGTGAA GCATGCTCTG TTTGTTGGCA TAGGGATACA 
    AATCCTGCAA CAGTTTGCTG GCATTAATGG AGTTCTGTAC TACACTCCAC 
    AAATTCTTGA GCAAGCTGGT GTTGGTGTTC TTCTTGCAAA CATTGGACTT 
    AGCTCCTCAT CTGCATCTAT TCTTATTAGC GGACTGACAA CCTTGCTGAT 
    GCTTCCCAGC ATTGGTATTG CTATGAGGCT CATGGATATG TCTGGAAGAA 
    GGTTTCTTCT CCTTGCAACA ATCCCTATCC TGATAGTAGC ACTAGCTATC 
    TTGATTCTGG TCAATATTCT GGATGTGGGG ACCATGGTTC ATGCCTCACT 
    GTCCACAGTC AGTGTCATAC TCTACTTCTG CTTCTTTGTC ATGGGGTTCG 
    GGCCTATTCC AAACATTCTC TGTGCAGAGA TTTTCCCGAC CACCGTTCGT 
    GGCATCTGCA TAGCCATCTG TGCCCTAACA TTCTGGATCG GTGATATCAT 
    TGTGACATAC ACCCTCCCCG TGATGCTCAA CGCCATTGGA CTCGCTGGAG 
    TGTTTGGAAT CTACGCAGTG GTCTGCATAC TGGCTTTCCT GTTTGTCTTC 
    ATGAAGGTGC CGGAGACAAA GGGCATGCCT CTTGAAGTCA TCACCGAGTT 
    CTTCTCTGTC GGAGCAAAGC AGGCCAAGGA GGACTAGTTG CTCGGATCAA 
    GTGATCAATC AGATTGCTGG TGGTAATTTT GTTGCTTCCA AATCGCGCTG 
    CGGGTTAAAC CTGTGATGGA TGCTTTGTTA AAGAATCTTG GAAGAGATCA 
    AAATGCAGTG AGCCTAAAGA GATGATTTGG CTGTACATCA TGAGGCTGAA 
    TCCTGTCGTA GACTGGATTT TGGAGCTTAG GATATGTAGA TCATCTGTTC 
    CTTTTGGTTT GGTCATTTTC CATTTGTGTT TCTTTGGAAT TCTTCTCCCT 
    GTAACTAGTG GTCTATCACA GTTGTGTTAC TGGTTTTGCC TTACTCTTGA 
    GTTTGTTTTC TTCT

    Gene models with high sequence identity

    1. AT4G35300.5 [+] show detail - tonoplast monosaccharide transporter2
      E-value: 9e-134; Score: 474.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Sugar/inositol transporter 0.000000045
    FPrintScan Sugar/inositol transporter 0.000000045
    FPrintScan Sugar/inositol transporter 0.000000045
    superfamily Major facilitator superfamily, general substrate transporter 6.4e-21
    ProfileScan MFS 10.505
    HMMPanther SUGAR TRANSPORTER-RELATED 1.6e-43
    HMMPanther SUGAR TRANSPORTER 1.6e-43
    HMMPfam General substrate transporter 1.3e-40

    See the detailed result >

    AT4G35300.5

    Model type
    Protein coding
    Short Description
    tonoplast monosaccharide transporter2
    Computational Description
    tonoplast monosaccharide transporter2 (TMT2); CONTAINS InterPro DOMAIN/s: Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter3 (TAIR:AT3G51490.2).
    Link
    InterPro Scan - TAIR