K04708

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04708

Determination of introduced cDNA(s)

  • J023110L18 - Rice Full-length cDNAs - Original: J023110L18

    full reading [+] show sequence

    Nucleotide sequence: J023110L18 - full reading 
    GGGGGAGCCT TGGCGGGGAG GAGGGGGCGA GGCCGGCTGC GGCGGCGGAG 
    GGGGCGCGGA GGCCGAGGTT CCTGTGCCTG CACGGGTTCC GGACGAGCGG 
    GGAGATCATG CGGAAGCAGG TGGTGGGGAA GTGGCCCGCC GACGTCACGG 
    CGCGCCTCGA CCTCGTCTTC GCCGACGCGC CGTTCCCCGC CGAGGGGAAG 
    TCCGACGCCG TGGGCATCTT CGACCCGCCC TACTACGAGT GGTTCCAGTT 
    CGACAAGAAT TTTACAGAGT ACAGGAATTT CGACGAATGC CTGAACTACA 
    TCGAGGAATT GATGATTAAA GAAGGGCCTT TTGATGGACT GATGGGTTTC 
    TCTCAGGGCT CGATTCTATC TGGCGCCCTT CCGGGCCTCC AAGAACAAGG 
    GTTGGCCCTG ACTAGAGTTC CTAAGATCAA GTACCTCATA ATCATAGGAG 
    GCGCCAAGTT TCAGTCGCCG ACGGTTGCCG AGAAGGCGTA CGCCAATAAC 
    ATCAAATGCC CCTCGGTTCA CTTCCTCGGT GACACTGACT TTCTGAAAAC 
    CCATGGCGAA AAGCTTATAG AATCATATGT GGATCCATTC ATCATACGTC 
    ATCCAAAGGG CCACACTGTT CCAAGGCTTG ATGAGAAGAG TCTGGAAATC 
    ATGCTCCGTT TCCTCGATAA GATTGAGAAG GAGACAGCGC TCGAGCATTC 
    ATCCACTGAT GTTGACGAAA AGGAAATGTA CTTGTGAAGG GTAGAAGATT 
    AGTGTCCAGT CCAGATACAC ACCAAATTCA TACTATAGAC AAGCATACTG 
    TTGTACTTGT ATCCTCCTTA TTTATGTGGT GGTACAAAGA GTTGAAAACT 
    ATTGAATAAT CACGCAAAAG AATGGATGTG TACTCTTT

    Gene models with high sequence identity

    1. AT4G24380.1 [+] show detail - INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthet...
      E-value: 3e-79; Score: 291.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OVARIAN CANCER GENE-2 PROTEIN-RELATED 1e-55
    HMMPfam Serine hydrolase 9.9e-48
    superfamily alpha/beta-Hydrolases 2.4e-07

    See the detailed result >

    AT4G24380.1

    Model type
    Protein coding
    Computational Description
    INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR