K04711

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04711

Determination of introduced cDNA(s)

J013002N15 - Rice Full-length cDNAs - Original: J013002N15

full reading [+] show sequence

TTTGGGGGAA AGAAGAAGAA GAAGAAGCAG AAGAAGCTTG GAGCTTGAGC 
TTTCTGAATT TCAGTCGGTG TAACTAATGG GGGAGATGAA CCAGCCGCCG 
CCGCCGCCGG TGGCCGTGCC GCCGCCGATG GTGATGCAGC CAATCATGCA 
TCCGCCCGTC GGCACCGGCG CCGTCTTCCC GCCGCACGAG CAGTTCCACC 
ATCTCGCCTA CTGCGTCCAC TCCAACCCTT CCTGGGTTCA GGTGGCCGCA 
CTTGCATTCC TCCACTATCT TGTGATGCTG GGTTCTACTG TCATGCTTGC 
ATCAACTATT GTTCCTGCAA TGGGTGGTAC CCCAGGGGAT AAGGCTCGTG 
TTATTCAATC CTTCCTATTT ATGAGTGGCA TCAATACTCT CCTCCAAACA 
CTTGTTGGAA CGCGGCTCCC TACAGTTATG AATGCTTCCT TTGCATTTGT 
CGTCCCAGTA CTGTCAATAG CCAAAGACTT TGAACAAAAT AACTATGCGA 
GCAGTCACCA GAGATTTACT CACACAATGA GAGCAACTCA AGGGGCTCTG 
ATTGTTGCTT CTATCCTCAA CATGATTCTT GGGTTCAGCA CAATTTGGGG 
GGCATTCGCC AGGAAATTTA GTCCTGTAAT AATGACCCCT GTTGTTTGCG 
TTGTTGGTCT TGGGCTATTT GCACTTGGCT TTCCCCAGGT TGGAAAGTGT 
GTGGAGATCG GGCTACCAAT GCTAATCCTT GCAGTTGTTG TGCAACAGTA 
TGTGCCATAT TACTTCCATC ATTACCATGA GCGAATCACC TTCTTGTTTG 
AGAGGTATTC GTTGCTTCTT TGTATTGGGA TTGTGTGGGC CTTTGCAGCT 
ATCCTTACTG CTGCTGGTGC ATACAACCAT GTTTCACTCA AGACCCAGCA 
GCACTGCCGC ACTGACAAGT CCTATCTCAT ATCATCGGCA CCATGGATCA 
AAATCCCATA CCCCTTCCAA TGGGGTACAC CAATCTTCAC TGCAGGTCAT 
TCATTTGGAA TGATGGGTGC TGTACTTGTT TCTGCTTTTG AGTCCACTGG 
TGCACACTTT GCAACTGCAC GTCTAGCTGG TGCGACACCA CCTCCAGCTA 
GTGTCCTTAG TAGGAGTGTT GGTTTGCAGG GCATTGGAAT GTTCCTAGAA 
GGTATCTTTG GCGCTCCAGC TGGTTCATCT GTATCAGTTG AAAACATTGG 
GCTTCTTGGA CTAACAAAAG TTGGAAGCAG GAGAGTGATC CAGATATCAA 
CTGGATTTAT GATTTTCTTC TCCATATTTG GGAAGTTTGG TGCTTTCTTT 
GCATCTATTC CATTGCCAAT CTTCGCAGCA ATTTTCTGTA TCTTATTTGG 
TATTGTTGCT GCGGTGGGAG TCTCGTACAT GCAATTTGTA AACAAAAATT 
CGATGAGGAA CATATACATC ATTGGACTTT CGCTGTTCCT AGGCATCTCG 
GTTCCTCAAT ACTTCCATGA GTATACTGCT TCTGCTAGCA CTGGACCTGC 
CCGAACAAAT GCTGGATGGT TCAATGACAT CATAAACACA GTCTTCGCCT 
CTGGCCCGAC AGTGTCACTG ATTGTCGCAT CGATCCTGGA CAACACACTG 
GAGTTTAGAG GCTACGAAAA CGACCGGGGG CTTCCATGGT TCATGCCGTT 
CCTGCACCGT CGGAAAGGTT ACTCAGATCC TAGAAACGAC GAGTTCTACA 
GCTTCCCGAT CAGGGTGCAT GACGTCATCC CAAGCCGATT CCTCTGACGG 
GCGAGGGTAG CGCCCGTTAC CTGCGCTTCC GCGCATGTAA ATCTCTTTGT 
TCTTGTTAGC CCTTCCTTAC TCCTGTGACA TGTAGCAATT GGCACCGCCA 
AGATTAAAAA GTCTCAACTT AGTGGGGATA TGGTACAAAT GGTTAGGACT 
TTTGGTTTTC TTTTCTTTTT CCTCCCCTTT GGGCCAACCA TTTGGTTAAT 
TACATGATGG TGTAGAGTTG GTTAAATGAT TTTGGGATGG ATCTTTAAAG 
AATATCAGCC ACCTCAATTT GTTGATTGCT CAGCCAGTGA TGTAGATGTG 
CTTCCAGGAC ATGCATTGAT TTCGTCATAA CTCTGTAATC

Gene models with high sequence identity

AT2G26510.1 [+] show detail - Xanthine/uracil permease family protein
E-value: 0; Score: 666.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Xanthine/uracil/vitamin C permease	1.1e-67
HMMPanther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	1.5e-225
HMMPanther	Xanthine/uracil/vitamin C permease	1.5e-225

See the detailed result >

AT2G26510.1

Model type: Protein coding
Short Description: Xanthine/uracil permease family protein
Curator Summary: permease
Computational Description: pigment defective embryo 135 (PDE135); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT2G34190.1); Has 9126 Blast hits to 9110 proteins in 1899 species: Archae - 65; Bacteria - 7470; Metazoa - 356; Fungi - 126; Plants - 439; Viruses - 1; Other Eukaryotes - 669 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033096D06 - Rice Full-length cDNAs - Original: J033096D06

full reading [+] show sequence

ACCATACTAG AGAAAGCCAT AGAAAGGAGA TAAGAAGAAA CCAAGAAAAG 
GGAGAAACAA AAGTTGAAGA AGACTTTCTG CTGATATTTT TGCACATATA 
TATAATTTTT TCTCCTCCAT CTGCACTCTC TGGAAAGAAG AAGAAGAAGA 
AGCAGAAGAA GCTTGGAGCT TGAGCTTTCT GAATTTGTCT TGTCTTGCAA 
ACTAGGATAA AGATACAAGT TAGTAGTACA AGAAACAGTA AAGCAGTCGG 
TGTAACTAAT GGGGGAGATG AACCAGCCGC CGCCGCCGCC GGTGGCCGTG 
CCGCCGCCGA TGGTGATGCA GCCAATCATG CATCCGCCCG TCGGCACCGG 
CGCCGTCTTC CCGCCGCACG AGCAGTTCCA CCATCTCGCC TACTGCGTCC 
ACTCCAACCC TTCCTGGGTT CAGGTGGCCG CACTTGCATT CCTCCACTAT 
CTTGTGATGC TGGGTTCTAC TGTCATGCTT GCATCAACTA TTGTTCCTGC 
AATGGGTGGT ACCCCAGGGG ATAAGGCTCG TGTTATTCAA TCCTTCCTAT 
TTATGAGTGG CATCAATACT CTCCTCCAAA CACTTGTTGG AACGCGGCTC 
CCTACAGTTA TGAATGCTTC CTTTGCATTT GTCGTCCCAG TACTGTCAAT 
AGCCAAAGAC TTTGAACAAA ATAACTATGC GAGCAGTCAC CAGAGATTTA 
CTCACACAAT GAGAGCAACT CAAGGGGCTC TGATTGTTGC TTCTATCCTC 
AACATGATTC TTGGGTTCAG CACAATTTGG GGGGCATTCG CCAGGAAATT 
TAGTCCTGTA ATAATGACCC CTGTTGTTTG CGTTGTTGGT CTTGGGCTAT 
TTGCACTTGG CTTTCCCCAG GTTGGAAAGT GTGTGGAGAT CGGGCTACCA 
ATGCTAATCC TTGCAGTTGT TGTGCAACAG TATGTGCCAT ATTACTTCCA 
TCATTACCAT GAGCGAATCA CCTTCTTGTT TGAGAGGTAT TCGTTGCTTC 
TTTGTATTGG GATTGTGTGG GCCTTTGCAG CTATCCTTAC TGCTGCTGGT 
GCATACAACC ATGTTTCACT CAAGACCCAG CAGCACTGCC GCACTGACAA 
GTCCTATCTC ATATCATCGG CACCATGGAT CAAAATCCCA TACCCCTTCC 
AATGGGGTAC ACCAATCTTC ACTGCAGGTC ATTCATTTGG AATGATGGGT 
GCTGTACTTG TTTCTGCTTT TGAGTCCACT GGTGCACACT TTGCAACTGC 
ACGTCTAGCT GGTGCGACAC CACCTCCAGC TAGTGTCCTT AGTAGGAGTG 
TTGGTTTGCA GGGCATTGGA ATGTTCCT

Gene models with high sequence identity

AT2G26510.2 [+] show detail - Xanthine/uracil permease family protein
E-value: 2e-122; Score: 436.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	3.9e-135
HMMPanther	Xanthine/uracil/vitamin C permease	3.9e-135
HMMPfam	Xanthine/uracil/vitamin C permease	1e-36

See the detailed result >

AT2G26510.2

Model type: Protein coding
Short Description: Xanthine/uracil permease family protein
Curator Summary: permease
Computational Description: pigment defective embryo 135 (PDE135); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT2G05760.1).
Link: InterPro Scan - TAIR