K04722

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04722

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04722

Determination of introduced cDNA(s)

  • J013095M22 - Rice Full-length cDNAs - Original: J013095M22

    full reading [+] show sequence

    Nucleotide sequence: J013095M22 - full reading 
    GGTGCATCTC GCTACCTAAC CTAGCTAACC TCCTCTCTTC TTCTTCTTCT 
    TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTAG 
    GCTAGCACTG CACGTGCCCA ACTAACACAT ACATTCATCA TATATACACC 
    TCCTCCTCCT TCTTCCTCTG AGTTGTGTGT GCATATATAA TCTACTAGTA 
    GAGAGCAGGG CTAGGCTAGC AATTGCAATG GCGCCTCCCT ATGAAACCAG 
    CGCCGCCGGC TCTGAATCGC CGGTGCCGGT GGTAACGGTG GATGTGGCGG 
    CGGCGAGCGA CCTTATCACC TCGGCCGGCC ACCGTTACGT CGACGTCAGG 
    ACAGAGGAGG AAATGAACAA GGGCCATCTA CACAACTCCC TCAACGTGCC 
    CTTCATGTTC GTCACGCCGC AAGGGAGGGA AAAGAATCCT CTGTTTGTGG 
    AGCAGTTCTC GTCGCTAGTG AGCAAAGAGG AGCATGTGGT TGTGGGGTGC 
    CAAAGCGGGA AGAGGTCGGA GCTAGCATGC GTTGATCTCC TTGAAGCAGG 
    GTTCAAGAAC GTGAAGAACA TGGGAGGAGG CTACGCAGCG TGGCTCGACA 
    ATGGATTCCC CATAAACACT CCTCCTCATA CAATGTATTA ACGCTTTGCA 
    GCACCGATGA GATGAGCGAG TGATAAACAC GGACTCTACT GTATCTACTG 
    TATCTCATTC CAACCCCTCT TCTCATCTGC CTGCTAGCCG CTGCTTCGTG 
    TGCCCTGCCA TGTATATGTA TGTGCGTCCT GTTTTCCTGT TTGTTACTAC 
    TGGTATTATG GAGGCAGCCA ATTGAATAAA ATTGATCATC ATGCATGCAA 
    TGCACGATGC GTCTCC

    Gene models with high sequence identity

    1. AT2G21045.1 [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
      E-value: 1e-28; Score: 123.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Rhodanese-like 17.754
    HMMPfam Rhodanese-like 9.6e-16
    HMMSmart Rhodanese-like 3.7e-18
    HMMPanther FAMILY NOT NAMED 1.2e-06
    Gene3D Rhodanese-like 1.3e-27
    superfamily Rhodanese-like 1.2e-24

    See the detailed result >

    AT2G21045.1

    Model type
    Protein coding
    Short Description
    Rhodanese/Cell cycle control phosphatase superfamily protein
    Computational Description
    Rhodanese/Cell cycle control phosphatase superfamily protein; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase 18 (TAIR:AT5G66170.3); Has 3150 Blast hits to 3144 proteins in 1047 species: Archae - 52; Bacteria - 2382; Metazoa - 28; Fungi - 31; Plants - 181; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR