K04729

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04729

Determination of introduced cDNA(s)

  • J023002M10 - Rice Full-length cDNAs - Original: J023002M10

    full reading [+] show sequence

    Nucleotide sequence: J023002M10 - full reading 
    GCGGGGCTGG AGAACGTCTT TTCTCAATTG TGTTATTGCA GTTTCATGTG 
    AGGGTGCTCC TCCTGTCCAA ATGGGAGAAA GATATCCTCA CATGTTCTTG 
    ATCCTCCTAC TTTTTCATGG AGCCCATGCG GCTTTGAAAG ATCCAGTACA 
    GAAATGGCAG ACTCTTGGAG GTCAGCGTCC TCTTGTCATT GCTCGTGGAG 
    GGTTCTCCGG CTTGTTTCCT GATTCAAGCC AGTTCTCGTA CCAGTTTGCA 
    ATGTCGAGTA GCTTGCATGA TGTGGTTCTG TACTGTGATC TGCAATTGTC 
    CAGTGATGGT TTGGGCTTCT GCAAAACTGG ATTGACATTA GAGAACTCGA 
    CGCTTATCGC CGAAGCCTTC CCTAAGAGGG CCAAGACATA CAAGGTGAAT 
    GGAGAGGAAA TCCATGGGTG GTTTGCTTTG GATTTCACCG CAGACGAGCT 
    GTATCAGAAT GTCACATTGA TCCAGGACAT CTTTTCTCGC CCAAGCACAT 
    TTGATGGAGC CATGGGAATG TTTACCCTTG AAGATCTTGT CGGACTCAAG 
    CCCCCACATT TATGGGTTAA TGTAGAGTAT GCTTTATTTC TCCAGGAGCA 
    CAAATTAAGT GCCGAAGATT ACATATTAGG ATTACCAAAA GATTTTAGTG 
    TCGCTTACAT CTCCTCACCA GAAATTGGAT TCTTGAAAAA CGTGGGTGCT 
    AAGCTCAAGA AAAGCAACAC CAAGCTAATT TTCCGGTTTC TTAGAGAAGA 
    CGTCGCTGAG CATACCACCA AGAAAACGTA TGGAGAGATC CTGAAAGACC 
    TGAAATCCGT CAAGGCCTTT GCATCAGGGA TTCTTGTCCC CAAGGAATAC 
    ATTTGGCCAT TGGGCAAGGA CCAGTATCTG CGGCTGCCTA CTAGTTTGGT 
    CAAGGATGCA CATGCCCTTG GGCTTGAAGT TTTTGCCTCT GGATTTGCCA 
    ATGATGTCTC CATGAGTTAC AACTACAGCT TTGATCCCAG TGCAGAGTAC 
    TTGCAGTACA TTGGCAATGC AAACTTCTCT GTCGACGGCG TGATAACGGG 
    TTTCCCTCCC ACTGCATCAG GAGCTGTTGC GTGTTTGGCA AATACCAAGG 
    GCAATCCTCT TCCTCCTCCT GGTGGTGATG GAGGCAGGCC ACTGATCATA 
    ACCCACAATG GCGCGAGCGG CGTCTACCCG GGCAGCACTG ACCTCGCATA 
    TCAGCAGGCG GTGAAAGACG GCGCCGACAT CATCGATTGC GCGGTCCGGA 
    TGTCGAAAGA CGGCGTGGCC TTCTGCCAGC CATCTGCAGA CCTCAGCACC 
    AGCACGACGG CGTCCACCAG TTTCATGACC AAAATCTCCA CTGTCAGTGA 
    AATTCAGAAC AAGTCGGGCA TCTTCTCCTT TGATCTCACA TGGAGCGAAA 
    TCCAAACATT AAAACCCGAT CTTCTTGGTC CGTACACCCA GGCAGGCCTG 
    AAGAGGAACC CCGCCGCGAA GAACGCCGGC AAGTTCGTGA CATTGCCTGA 
    ATTCCTAGAC TTGGCCAAGG CCACCAATGT CTCTGGCATC ATGGTCGAGA 
    TGGAGCACGC ATCGTTACTC GCGAAGCGAG GCCTCGGGCT GGTGGATGCC 
    GTGTCGGGGG CGCTGGCGAA CGCGAGCTAC GACAAGGAGG GCGGGCACCT 
    GCCGGAGCTG ATGGTGGTGT CGGACGACAC GTCGGTGCTG GCGGCGTTCA 
    AGAAGTTCCC GGCGTTCAGG CGGGTGCTGA TGGTGGACGA GACGGTCAGC 
    GACGCGTCGG CGCCGTCGGT GGAGGAGATC AAGCAGTTCG CGACGGCGGT 
    GACCGTCGGC CGCGGGTCGA TCGCGCAGGT GAACGGCTTC TTCCTCACGC 
    GGTTCACCGA CGTCGCCGAC CGGATGCACG CCGCCAACCT CACCGTCTAC 
    GTCGGCGTGC TCCGGAACGA GTTCATGAAC CTCGGATTCG ACTACTGGGC 
    CGACCCCATC ATCGAGATCG CCACCTACGC CTTCCACGTC ATGGCCGACG 
    GCCTCATCAC CGAGTACCCC GCCACCGCCG CCACCTACTT CCGGAGTCCG 
    TGCAGCGATC TGAGCCTGAA CCTGAGCTAC GCGATCCTGC CGGCGGACGC 
    CGGCGCCGGT GGCTGCCGTG TGCTGGCCGC CGCCGTCGCT TCCCTGTTTC 
    TGATACTGCT GCCATCTCAT GGCTTCCATT GACGACGATC TTGATGGATG 
    GCATTGTACT AACAGATGTT TTCTCTGCGT TTTTCTCTCC TCGTATCCTA 
    CTTTGTACTG TGTAACATAA TGTTCTCTAA ATAGATTATA TGTGT

    Gene models with high sequence identity

    1. AT5G58170.1 [+] show detail - SHV3-like 5
      E-value: 0; Score: 697.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glycerophosphoryl diester phosphodiesterase 4.6e-25
    HMMPfam Glycerophosphoryl diester phosphodiesterase 6.2e-20
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.6e-42
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 2.6e-38
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 3.9e-32
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.5e-39

    See the detailed result >

    AT5G58170.1

    Model type
    Protein coding
    Short Description
    SHV3-like 5
    Computational Description
    SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR