K04730

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04730

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04730

Determination of introduced cDNA(s)

  • J033076H20 - Rice Full-length cDNAs - Original: J033076H20

    full reading [+] show sequence

    Nucleotide sequence: J033076H20 - full reading 
    GAGGGATTTC TGAATTGTGA GGAGCAAGTT GCAAAAATAG CTTCGTCTCC 
    GAAGGAGGAA AGGGTCCTCC ACTCGATGTG CAGATTCCTC ATCAGTACGC 
    CTTTCTCTCG GAGGAGAGGG GAAAGGAAGG CGGAGGCGGG GAGGATGGCG 
    CGGAGCGTGT CGTACGTGTC GGCGGCGAAG CTCCTGGCCA TGGCGCGCAG 
    CAACCCCCGC GTCGCCATCA TCGACGTCAG GGACGAGGAG AGGAGCTACC 
    AGGCGCACAT CGGGGGGTCG CACCACTTCT CCAGCCGCAG CTTCGCGGCG 
    CGGCTGCCGG AGCTCGCGCG TGCCACCGGC GACAAGGACA CCGTCGTCTT 
    TCACTGCGCC CTCAGCAAGG TGCGAGGTCC ATCGTGTGCC AAGATGTTCT 
    CCGACTATCT ATCTGAGACC AAGGAAGAAT CAGGAACAAA GAACATCATG 
    GTGCTGGAAC GTGGGTTCAA TGGATGGGAG CTTTCGGGAC AACCCGTTTG 
    CCGGTGCACT GATGCCCCTT GCAAAGGCAC ATGCTCACCT GAAGAACCTG 
    AGTTGTAACT CTACTCGCTT CCTGAATGAT CAGCAATGTT GGCAGTCGAT 
    CTCCAATGCT GAATTTGGTC TATTTTGCCT CATGAGATCA TTCGTCACAG 
    TGTATTGGAC TGAAATGCCA CTTTGTGGAC AATTTCATCA GATATAGCAT 
    AAGTTAACTA CCCCACTGTA GTGTCAGGCA CACCACGGGG TACTGAATTA 
    TTACTGATTA CTAAAAACTC TTTACATCTT GGCTGAAGAA ATGTTCAGCT 
    TCTTCATGTG CTATGTGTTA TC

    Gene models with high sequence identity

    1. AT5G03455.1 [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
      E-value: 8e-42; Score: 167.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Rhodanese-like 0.000059
    Gene3D Rhodanese-like 2.4e-44
    superfamily Rhodanese-like 4.7e-26
    ProfileScan Rhodanese-like 14.587
    HMMPfam Rhodanese-like 0.00000000000017

    See the detailed result >

    AT5G03455.1

    Model type
    Protein coding
    Short Description
    Rhodanese/Cell cycle control phosphatase superfamily protein
    Curator Summary
    Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.
    Computational Description
    CDC25; FUNCTIONS IN: protein tyrosine phosphatase activity, arsenate reductase activity; INVOLVED IN: protein amino acid phosphorylation, response to arsenic; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR