K04801

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04801

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04801

Determination of introduced cDNA(s)

  • J023008N15 - Rice Full-length cDNAs - Original: J023008N15

    full reading [+] show sequence

    Nucleotide sequence: J023008N15 - full reading 
    GGCAGCACCC CCCACCTCCT CGCCTCCCAC ACATCGCTCC CGCGCATTCC 
    CACCGCCCGC CTCCCTCCCT CCATCTGCCG CCGAGGAGTT CCCCGATCGC 
    GCGCGCGCGT AGCGTAGCGT AGCCTAGGCG GCGGCGGCCG GGGCCGGAGG 
    GGGGGACATG GCGCCGCAGA AGAGGACGAC GCTGGTCTAC AGCTTCGTGG 
    CGCGCGGCGC CGTCGTGCTG GCCGACCACG CCGAGGTCTC CGGCAACTTC 
    GCCTCCGTCG CCGCGCAGTG CCTCCAGAAG CTCCCCTCCA CCAACAACCG 
    CCACAGCTAC AACTGCGACG GCCACACCTT CAACTACCAT GTCCACGACG 
    GATTCACATA CTGTGTTGTT GCTACCGAGT CTGCTGGTCG GCAACTTCCA 
    GTTGGCTTCA TTGAGAGAGT AAAGGAAGAT TTTTCCAAGA AATATAGTGG 
    AGGAAAAGCA AAGAATGCTA CCGCGAATAG CCTCAAGCGA GAATATGGGC 
    CTAAACTTAA AGAACACATG AAGTACTGTG ATGCGCACCC TGAGGAGATT 
    GACAAGCTTG CCAAAGTGAA GGCTCAGGTT ACAGAGGTCA AAGGAGTTAT 
    GATGCAAAAC ATTGAAAAGG TTTTAGATCG TGGTGAGAAA ATTGAGCTGC 
    TTGTCGACAA GACAGAGGAT CTCCGCTCAC AGGCACAAGA CTTTAGAAAA 
    GCGGGAACAA AGATTCGGCG AAAGATGTGG TGGGAGAATA TGAAGATGAA 
    GCTCATTGTT TTCGGCATTG TAGTTGCATT GATCCTCGTC ATCATCTTGA 
    CGGTTTGCCG TGACTTGAAC TGCTGGTAAC ACACAACACA TATACGGCTC 
    ACCTCACCTA ATATTTGCTA TAGCCTTCAG TTCTGATAAT GCTGAAGAAA 
    GGGCACACAT AAAAAAGGAG AAAGGGCGTG TTAGAGGGTT ATTGTTTTGA 
    AACAAAACTG TCACATAGGG AGTGCGAAAT CACCATGAAT CTATCAGCTT 
    GATTGATGGT GTTGCTAGCT CATCAACTTT TATTTAGTTA TTTCTGGACC 
    CAAAGGCTCA CAATATATAA TAGAGCCCTC TCCTGTGCTT GTACAGGGAT 
    GTCCATATTC TTTCTACAAT GTAATATTAC TAGTATTCTT GTAATTCAGA 
    AGAGGTAATT TTGCATGTTT GCTTCAATAT ATTTCGTACA GAGCTAATTG 
    TCCAGGCC

    Gene models with high sequence identity

    1. AT2G32670.1 [+] show detail - vesicle-associated membrane protein 725
      E-value: 8e-84; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Synaptobrevin 1.3e-20
    FPrintScan Synaptobrevin 1.3e-20
    FPrintScan Synaptobrevin 1.3e-20
    ProfileScan Longin 24.252
    ProfileScan Synaptobrevin 19.895
    PatternScan Synaptobrevin 0
    superfamily Longin-like 9.1e-27
    HMMPfam Synaptobrevin 6.7e-36
    Gene3D no description 8e-27
    HMMPanther VAMP-7 1.5e-112
    HMMPanther SNARE PROTEINS 1.5e-112

    See the detailed result >

    AT2G32670.1

    Model type
    Protein coding
    Short Description
    vesicle-associated membrane protein 725
    Curator Summary
    member of Synaptobrevin -like protein family
    Computational Description
    vesicle-associated membrane protein 725 (VAMP725); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 726 (TAIR:AT1G04760.1); Has 2451 Blast hits to 2449 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 984; Fungi - 445; Plants - 609; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR