K04806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04806

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04806

Determination of introduced cDNA(s)

  • J013001H17 - Rice Full-length cDNAs - Original: J013001H17

    full reading [+] show sequence

    Nucleotide sequence: J013001H17 - full reading
    GGGTTCGTCT AGTCGTCTTC CTACTCTCCT CCGATCTCCA ATTCTTATCC 
    AACCCATGGT GCTTGGCTCC CCGGAAGTCG GGATGGAGGA TTCGTCGGCG
    ACTCACCTCT CCGACGAGGT GCAGGATCCA GGTCGAGGAA GCTCAGATGC
    TTCTGTTCGT ACTTCTTTGC GAGATTCGAC AGGAAAGGAG GCTGTTGCGG
    CCGTTGAACC GGTGAGGGAG GAGCTGGTTC AGAGCGCGGT CGGTTTTCTG
    AAACACCCAA AGGTAGTGGC CTCTTCTGAT GTCCAGAGGC GTTCTTTCCT
    TGAGAAGAAA GGGCTCACCG TGGATGAAAT CGATGAGGCA TTTCGACGTT
    TACTTAGCCC ATCTTCAAAC TCCATGAGTC CAAATTATTG CACATATCAA
    GGGGTATCTG ATCATTCTTC AAAAATCACA CAGGAGAATC CTTCAACAGT
    TACAAAATGT ATGGATGATG ATTCAGGGAG ACCTGAGCCT GAAACTGAAT
    CTGTGGATCC TGTGGTGCCT CGCCACCCAA AATCATATAT GGAGATCATG
    GAAATGATAC AAAGGGGAGA GCGGCCAGAT GATATACAGG ACATTAATGA
    TGACCCTCCA AACCCTTATC AACCAATCTC GGAATCCCGC ATGGCACCAA
    AGCCCAAGCC ATGGGAAAAG CAGGGTCAAG AAAGTTCCAT CTGGGAGTTG
    AAATCTCAGT CAATGGACAC CATCGAATCG AGATCAGAAA TTCAACTTGA
    CAGCGCCAAC CAATTTACTG AAACGGAGAA TAGATCAAAT CAAGGGGACT
    CACTATTGCT GGAAGAAACG GTTGCAGGTT CTGAAGCTCA CACAGATGAT
    GCTGCCTCGA CAAAGTCGTA AATGCAAAAG CACGTGATGA TGGAATTGAA
    CATGCTGGGA AACTATTTCA ACATATACTT AGCCAAAAAG CTCGAATTTC
    TAGTGCAACA GTTTTCTGAA ATTCTCTGAA CCTGCTTTCT CTGAGCTCAC
    TGATCTGCGT ACTTCCCTAT TGTTGGAATC AGATTTAGCA GGCACAAAAG
    ACCTCCCAAT TTTCGTTAGC TGGAACAGTT ATACAATCTG TATAATGTAA
    TCATGAAAAA TATACAAACA ACAACATGAA ATGTTGTGAC TTGTGAGGCT
    C

    Gene models with high sequence identity

    1. AT5G62810.1 [+] show detail - peroxin 14
      E-value: 3e-07; Score: 53.10

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62810.1

    Model type
    Protein coding
    Short Description
    peroxin 14
    Curator Summary
    mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)
    Computational Description
    peroxin 14 (PEX14); FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: peroxisome organization, protein targeting to peroxisome; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G62800.1); Has 366 Blast hits to 354 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 149; Plants - 89; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR