K04829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04829

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04829

Determination of introduced cDNA(s)

  • J013127C12 - Rice Full-length cDNAs - Original: J013127C12

    full reading [+] show sequence

    Nucleotide sequence: J013127C12 - full reading
    GATCTGATAT TACTCATCCA TTCCATCCGC GACAGGGAGC GTAGCATGCA 
    GGTGCAGATG CAGATGCAGC AGGCTACCAC CGTTCTCAGC AGCAGCAGCA
    ACCGGCCTTG GACGCTGTGG TGCCATCCTG TCCCAGTAGT CTCCTCCCCA
    TCCCACGCCA AAAATAAGAA GCATTGCCTC CGACTCCGAG CAGGCATGGC
    CATGGCCTCC TCCGAGCTTC CTGACCTGAG CGCAATACAA CGCGTGGTGC
    TGGACATCGA GGGCACCACG ACGCCCATCT CCTTCGTGGC GGACGTGCTC
    TTCCCCTACG CGCGCGACAA TGTCCGCCGC CACCTGGCCG CCACTTACGG
    CAGCAGCGAG GAGACGCGCG CTGACGTGGC CCTGCTGCGG GCGCAGGTGG
    AGGAGGACCT CGCGCAGGGC GTCGACGGTG CCGTGGCGGT TCCGCCGGAT
    GCGGAAGGGG AAGGGGAAGG CGCCGTGGTG GAGGCCCTGG CGGCGAACGT
    GGAGAGCATG ATTCGCGCGG ACAGGAAGGT GACGGCGCTG AAGCAGCTGC
    AGGGGCGCAT CTGGCGGCGG GGCTTCGACA GCGGCGAGCT GCGGAGCGAG
    GTGTACGACG ACGCGGCGGA CGCGCTGCGG CGGTGGCGTG CCAAGGCCTA
    CATCTACTCC AGCGGAAGCA GGGAGGCCCA GCGCCTCATC TTCGCCAACA
    CCGCTGCACA CGGCGATCTC CGCGACCACC TCTGCGGATT CTTCGACACC
    ACAATAGGGG CCAAGCGCGA GGTTAGCAGC TACTACGAGA TCTGGCAGAC
    TCTGGGCACG GACCGCCCCT CCCAGATCCT CTTCTTGACA GACGTCTACC
    AAGAAGCCGC TGCAGCAAAG ACTGCAGGCC TTGAGGTGAT AATATCTGTC
    AGGCCTGGAA ACGCACCCCT CCCTGATAAT CATGGTTTTC ACACAATCAC
    ATCATTCGCT GAAATCTCCA TCTGAACCTA GCCAGAAATG TCTTGTACTA
    TACAATCTGA TCCGAACAAT ATTCTACCGT ACGCTAGCAG CACAGTTAGC
    AAATGGTTTG GTTAGGTTTA AGGCAAGACA ATCTGGGGTG TAAATAAATG
    TGTAATAGTC CCAATCAAGC TAATACTATC ATGCTCCCAT TCCATCCAAA
    CCTGGAACAA CAATTTCAGA TGCATATACT ACTACTTTAC ATTTGTTCCT
    TTTCCT

    Gene models with high sequence identity

    1. AT5G53850.2 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 3e-70; Score: 262.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 3.4e-84
    superfamily HAD-like 3.4e-18
    HMMTigr 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2.6e-70

    See the detailed result >

    AT5G53850.2

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-methionine salvage from methylthioadenosine, L-methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR