K04916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04916

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04916

Determination of introduced cDNA(s)

  • J033069L14 - Rice Full-length cDNAs - Original: J033069L14

    full reading [+] show sequence

    Nucleotide sequence: J033069L14 - full reading 
    GACCCTTCCG CGAACCGCGG CGGTGAGAGA GGAAGACGTG GTGGAGTGAG 
    AACTGAGAAG GCGGGGGAGA AGAGCAGCGC CGCCGCCGCC GCCGAGCTCT 
    CCGGCGACGC CAAGTCGAAT CGGAGCCCGA CGCGGCGGAT GAAGCGCCGG 
    CCCGCCATGG ACTCCCACAA CGAGCAGCCG CCGCCGCCGA AGAGCTTAAA 
    GATCTATGTG AAGATGATGA AGACGTTCAC CCTCAATGTG AATAGTACTG 
    ATACAGTCGA TCAGATCAAA TCCAAACTCA GTGCTATTGA GGGGATTGAC 
    AAGAGCAAGC AAGAGATGTT CTTTGCTGGG ATGCACTTGA AGAATGAGGA 
    TAAGCTTGCT GATTATAACA TCATGACCAA CTCTTCTGTT GACCTCTATG 
    TCACTGATGC TATTCAAATA TCTGTAAGGA TTCCCTCTGT TGGAAAGACC 
    ACCAAGCTCA ATATGAGGAA ATCGAATAGT ATTGCTGACA TCAAGGCGGA 
    GATTGAACAG GAGGAAGGAA TTCTTATGAA CGAACAAATC CTGATGTATG 
    CCGGTCAACA GCTTGAGGAC AACCAGTTGT TAAGTCAGTG CGATTTGAGG 
    AATGATCAGA CATTTCATGT TTTGGTTTGC CCAAATGACA AGCTTCATGT 
    CTTTATCAAT GTTAGAGGAG AGAAAACTAT AGGCCTTGAA ACTAAACGCT 
    GGTACACCGT TGCTGATGTC AAGTTGATGA TTGAGAATTT GGAGGGCTTG 
    CCTGCATGCA GCCAGATACT CACACGGATG CAATCTGGTG TTGGTGTGGC 
    GCTCACAGAT GGTCGGATGC TACAGGATCA GCATGTCAAA AACAATGATA 
    CTCTCTTGCT GCAGCAGAAT GTTCAGTTCT TCGTCAAGTC ATGGGAGGGT 
    AAGACCTTAA CTATGGTTTT GAAAACGTCC GACACGGGTA AGCAAATCAA 
    GGATAGAATT GCAGAGAAGT TGCGGATCAA AGAAAGTCTG TACTATCTCT 
    GTCACAAGGG ACGTGTTCTG TTAACTGAGG ATACTCTTCT GGATCATGAG 
    GTCGAGAGTA ACTCCACAGT TTACATCCGC CTTCGGAATT CAGCGGTGGT 
    GAAACCAAAT GCAAAGAAGC GCTAGGTAGC TACTTCTATG AACTATCAAC 
    TTCCTTAAGG CAAGAGACAA AACATAGTTG CTTAGACGTT AGACCCTCGT 
    ATGGTTAGTT TTTGGTGTTA CTAATCCTAG TTCTCTAGCA GTGAACTGGA 
    GGTTTCAGGT TCCTGACTTG TGATGCCTAT CTATTAGTAA TACTTTTGCT 
    GTAAAAACTT TTGCTTGAAC TGAAGGGGAG ACACAGAAAG AACTGTGCAT 
    ATTTCC

    Gene models with high sequence identity

    1. AT5G20620.1 [+] show detail - ubiquitin 4
      E-value: 4e-42; Score: 169.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ubiquitin subgroup 2.6e-09
    FPrintScan Ubiquitin subgroup 2.6e-09
    FPrintScan Ubiquitin subgroup 2.6e-09
    superfamily Ubiquitin-like 4.9e-19
    superfamily Ubiquitin-like 2e-16
    superfamily Ubiquitin-like 1.5e-15
    superfamily Ubiquitin-like 1.8e-13
    HMMPanther gb def: Putative polyubiquitin 1.2e-177
    HMMPanther UBIQUITIN 1.2e-177
    HMMSmart Ubiquitin 5.4e-14
    HMMSmart Ubiquitin 2.8e-11
    HMMSmart Ubiquitin 1.5
    HMMSmart Ubiquitin 4.9e-05
    ProfileScan Ubiquitin supergroup 16.734
    ProfileScan Ubiquitin supergroup 18.04
    ProfileScan Ubiquitin supergroup 11.595
    ProfileScan Ubiquitin supergroup 12.988
    Gene3D no description 1.9e-13
    Gene3D no description 5.2e-15
    Gene3D no description 5e-06
    Gene3D no description 4.3e-10
    HMMPfam Ubiquitin 6e-16
    HMMPfam Ubiquitin 4.3e-15
    HMMPfam Ubiquitin 9.7e-05
    HMMPfam Ubiquitin 1.1e-08

    See the detailed result >

    AT5G20620.1

    Model type
    Protein coding
    Short Description
    ubiquitin 4
    Curator Summary
    encodes a ubiquitin polyprotein.
    Computational Description
    ubiquitin 4 (UBQ4); INVOLVED IN: protein modification process, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR