K04921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04921

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04921

Determination of introduced cDNA(s)

  • J023003E06 - Rice Full-length cDNAs - Original: J023003E06

    full reading [+] show sequence

    Nucleotide sequence: J023003E06 - full reading 
    GGCCATCCTC ATTGCTTGCT CCATGTGGAG TCACTTAGCG CAGTGTAGCT 
    AGCCATCACC GGGCATTCTC ATCGGATCCA TACAGCCCTA GCTAGCAGCT 
    GTACGTACAT TACAGAGTTT GTTGCCAGAG GAAAATGGAG GTGGGGACGT 
    GGGCGGTGGT GGTGGCGGTG GCGGCGGCGT ACATGACGTG GTTCTGGCGG 
    ATGTCCCGGG GGCTGAGCGG GCCGCGTGTG TGGCCGGTGG TCGGCAGCCT 
    GCCTGGGCTG GTGCAGCACG CCGAGAACAT GCACGAGTGG ATCGCCGCCA 
    ACCTGCGCCG CGCCGGCGGC ACGTACCAGA CGTGCATCTT CGCGGTGCCC 
    GGGGTGGCGC GCCGCGGCGG GCTGGTCACC GTCACCTGCG ACCCGCGCAA 
    CCTGGAGCAC GTCCTCAAGT CGCGGTTCGA CAACTACCCC AAGGGCCCCT 
    TCTGGCACGC CGTCTTCCGC GACCTGCTCG GCGACGGCAT CTTCAACTCC 
    GACGGCGAGA CGTGGGTCGC GCAGCGGAAG ACGGCGGCGC TCGAGTTCAC 
    CACGCGCACG CTGCGGACGG CAATGTCCAG GTGGGTCTCG CGGTCCATCC 
    ACCACCGGCT GCTGCCCATC CTGGACGACG CGGCCGCCGG CAAGGCGCAC 
    GTCGACCTGC AGGACCTCCT CCTCCGCCTC ACCTTCGACA ACATCTGCGG 
    CCTGGCGTTC GGCAAGGACC CCGAGACGCT CGCCAAGGGC TTGCCGGAGA 
    ACGCCTTCGC CTCCGCGTTC GACCGCGCGA CCGAGGCCAC GCTCAACCGG 
    TTCATCTTCC CGGAGTACCT GTGGCGCTGC AAGAAGTGGC TGGGCCTCGG 
    CATGGAGACC ACGCTGGCCA GCAGCGTCGC GCACGTCGAC CAGTACCTCG 
    CCGCCGTCAT CAAGGCGCGC AAGCTCGAGC TCGCGGGCAA CGGCAAGTGC 
    GACACCGTGG CGATGCATGA CGACCTGCTG TCCCGGTTCA TGCGGAAGGG 
    CTCCTACTCG GACGAGTCGC TGCAGCACGT GGCGCTCAAC TTCATCCTCG 
    CGGGCCGCGA CACATCCTCC GTGGCGCTCT CCTGGTTCTT CTGGCTCGTG 
    TCCACCCACC CCGCCGTGGA GCGCAAGGTC GTGCACGAGC TCTGCGCCGT 
    GCTCGCGGCG TCCCGGGGCG CCCATGACCC GGCATTGTGG CTGGCGGCGC 
    CCTTCACCTT CGAGGAGCTC GACAGTCTGG TCTACCTCAA GGCGGCGCTC 
    TCGGAGACAC TCCGCTTGTA CCCCTCCGTC CCAGAGGACT CCAAGCACGT 
    CGTCGCCGAC GACTACCTCC CGGACGGCAC GTTCGTGCCG GCCGGCTCGT 
    CGGTCACGTA CTCCATATAC TCGGCGGGGC GCATGAAGAC GGTGTGGGGG 
    GAGGACTGCC TCGAGTTCAG GCCGGAGCGG TGGCTGTCGG CCGACGGCTC 
    CAAGTTCGAG CCGCACGACT CGTACAAGTT CGTCGCGTTC AACGCCGGGC 
    CGAGGATTTG CCTCGGCAAG GACCTCGCCT ACCTGCAGAT GAAGAACATC 
    GCCGGGAGCG TGCTCCTCCG CCACCGCCTC GCCGTCGCGC AGGGACACCG 
    AGTCGAGCAG AAGATGTCCC TCACGCTCTT CATGAAGAAC GGGCTCCGAA 
    TGGAGGTACG TCCACGCGAC CTCGCGCCCG TCGCCGACGA GCTCCGCGGC 
    GCGGACGTGA GGGCCACCGC ACCATGCGCG TAGAAGATCC GAGGGCCCCG 
    CTCGCGCCAA GATTCGTGCT GATGGAGGCA TGGAACATTC AATGTGTAGA 
    TAAAGAGAGA GTACGAGACA GTAAGTAAAT TAAATGGGTT TGGTGGGAAC 
    ATTTAAGCCG CTTCTTCTCT GAATTTACCA TCCGGATCAG AGAAACTTGG 
    ATTTTTTTTT TTTTGCAAAG ACGAGATCTA CTTGGATTTG GATCTGAGAG 
    AGCAGAAGCG GAGAAGCAAA AAAGAGAACT AAAGAAAGAG CAATAATTTG 
    TGATGTAGCT AAGATGCAGA GTACTTTGAT AGTATTTGTT CGAGTTAGTT 
    TGTGTTGGTG ACCAGCCAAC TATTATATTT ATTTTATTCT ATTCTTAAGA 
    GACATTTTCT TCTTTTCC

    Gene models with high sequence identity

    1. AT4G00360.1 [+] show detail - cytochrome P450, family 86, subfamily A, polypeptide 2
      E-value: 0; Score: 726.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cytochrome P450, E-class, group I 1.5e-12
    FPrintScan Cytochrome P450, E-class, group I 1.5e-12
    FPrintScan Cytochrome P450, E-class, group I 1.5e-12
    FPrintScan Cytochrome P450, E-class, group I 1.5e-12
    FPrintScan Cytochrome P450, E-class, group I 1.5e-12
    FPrintScan Cytochrome P450, C-terminal 2.1e-11
    FPrintScan Cytochrome P450, C-terminal 2.1e-11
    FPrintScan Cytochrome P450, C-terminal 2.1e-11
    FPrintScan Cytochrome P450, C-terminal 2.1e-11
    PatternScan Cytochrome P450, conserved site 0
    HMMPfam Cytochrome P450 1.7e-65
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 1.6e-221
    HMMPanther Cytochrome P450 1.6e-221
    superfamily Cytochrome P450 7e-104
    Coil coiled-coil 0
    Gene3D Cytochrome P450 1.6e-95

    See the detailed result >

    AT4G00360.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 86, subfamily A, polypeptide 2
    Curator Summary
    Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.
    Computational Description
    "cytochrome P450, family 86, subfamily A, polypeptide 2" (CYP86A2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 4 (TAIR:AT1G01600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR