K04924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04924

Determination of introduced cDNA(s)

  • J033111K19 - Rice Full-length cDNAs - Original: J033111K19

    full reading [+] show sequence

    Nucleotide sequence: J033111K19 - full reading
    GAGGTGGCCT CCTCCCCGCG ATTCCCGTGT GAATTTGCTC TTTCTTCCCG 
    GATTTTTCGA CTTTCTTCTT CTTCTTGGTT TGCTCTTCTT CTTTCTTGGC
    GGTCTGCACC CATTCGGAGT CCGAGCTCAT CTCCGAGTCC ATGGCGCCTC
    TCGCCTTCGA TGGCTGGAAC TGAAATACTA GGCATTAGCG CCACTTATCT
    TGCTTCGATT TGGTAAATTT TGCTCGATTC CTTCATCGTG GAGTTGTGCT
    GTTCTTCGTA CTGGAGGTGT GTCCTTTTTA ATGATTGCTA ATATTCTTGG
    AAAGCAGGCA CGCCTGCCAT TGCTGAACTC GATGTTTTCT CATCGATTGG
    TCGGGATATT GCCGTTGATA GATTCCCCTG CAGTGCTCCT TTTCGTCTCT
    TCCATTCTCC TCTCAAATTC GCCTTGACAT TTTGGTCGGC ACTGTACTTT
    TGTGGTGGTG GCCACTGGCC AACAATGTTC AGGCCTGGAA CGATCGCCTG
    TGTGGCTAAT TCGGCGCGCA TTTTGCTGAA AAGTTTGCGG GCTTTTATCC
    TGTTTGCTGC TCTACCGGGT CACTGCTCTG CCAGTTTTGT CTCAATTTCT
    GTGATGCTTT CTGTGCCATA GCTTTCAAAT GTTGGCTTTG GTAAGGAGGG
    GATTGAGATA GGTTGGGTTA TCTGAGTGCA CACTTCACTA AAAAGTTTGG
    ATCCTTTTGT CCATTCTGCT GTGATTCCGT CGGAATTTGG CAATTTTCGC
    ATCGGGTGGA TTCTCCCCAG CTAAGCTACG AGCAATGCTT CTCGGACTAG
    AGAAAAATCA GCACAACGGG GAGGACACAT CGCCTGAGGC CAACGATTCC
    GGCGAGCTGG ACGACCAGAG GAGCATGGAG TGCTCCACCT CCACCGAAAT
    GTCGAGCAAC AGTGGCCACA GATCAAGAAA CCGAGCTCAG GACGACGACA
    GCTTCGACTC CGAGAGCAGC TCGTCGGGCC CGCCGACGGT GAAGAGGCCG
    GCGGCGGTGA CCGCCTTGCT GCCACCGTTC TCTAGGCCGA CGCCGTCGAA
    GTGGGATGAT GCAGAGAAGT GGATTTCTAG CCCCACGGCG AACCGCGGTG
    GCCGTGTGGG GAGTGCAGCT GGGGCTGCGC CGAAGAAATC GGCGCTGGCA
    TTTCCTGAAC ATGTAAGCCG GCCTCCAGCC GTTGCTAAGG TGGTTGCTGA
    GGTCCCCATC AACACTGGAA CCTTGGTGAA GAATTCAGTT GCTCTCGCAC
    AGCCTATTTC ATTTAATCCT GCACAAAGTG CTTCGATAGT TGATGAACCA
    GCTCCTGCAG TTAGGTCTGT TTCGATGAGA GACATGGGCA CAGAAATGAC
    TCCTATTGCC AGCCAGGAGC CCTCTCGGAC TGGGACTCCT ATTATAGCTT
    CTAGTCCAAC CTCCTCTCGG ACACCAACAC CACAACGTAA TGCAGAAATC
    AGTATTGGTG AATTTGGTCC AAATAAGATG GAAATGTCTG AGGAGGAACT
    ACAAATGAAT ACAAGAAAGG AAATCATGGA TCTTGGCCAA CGGCTGGGAA
    AGACAACTAT AGCTGCATGG GCTAGCAAGG AAGAGAAATC TACAACAAGT
    TTCGCAAATG TCATAACCGA CAAGGCTGTA GAAATCGACA GAGAGGCTCG
    TGCTGCAGAT TGGGAGGAGG CAGAGAAAGC AAAATATCTT GCAAGGTTTC
    AGAGGGAAGA GGTAAAGATT CAAGCTTGGG AAAACCACCA GAAAGCAAAA
    ATTGAAGCTG AAATGAAGAG GATGGAGGCA AAGATAGAGA TCAAGAGAGC
    TCGCGAGCAG GACAGGCTTT CGAGCAAGTT GGCAGCTGCA AGGCAAGGCA
    GAGGCGAGGA GGGAGGCCGC TGAGTCCAGG AAGAACCAAG AAGCAGCAAG
    AACTGAAGAG CAGGCGGCTC AGATCCGGAA AACCGGGCAC ATACCTTCCT
    CAATCTCCTG CTGGTGCTGG TGCCTGTGAT TCTTCACTCT GCCATGATCA
    TCTGTTATTT GGGTAGAAGA AAAATACTTG CTCCTTGCAC GACCATGTAA
    AATATTCGCT ACTGGTTGGT TCATCGTTCA GTGATCAATG CCAATGAGTC
    GCCATTTTTG TCC

    Gene models with high sequence identity

    1. AT2G02170.2 [+] show detail - Remorin family protein
      E-value: 2e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Remorin, C-terminal 2.7e-22
    HMMPfam Remorin, C-terminal 0.0000000089

    See the detailed result >

    AT2G02170.2

    Model type
    Protein coding
    Short Description
    Remorin family protein
    Computational Description
    Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 3690 Blast hits to 2594 proteins in 496 species: Archae - 6; Bacteria - 904; Metazoa - 645; Fungi - 344; Plants - 595; Viruses - 5; Other Eukaryotes - 1191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR