K04924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04924

Determination of introduced cDNA(s)

J033111K19 - Rice Full-length cDNAs - Original: J033111K19

full reading [+] show sequence

GAGGTGGCCT CCTCCCCGCG ATTCCCGTGT GAATTTGCTC TTTCTTCCCG 
GATTTTTCGA CTTTCTTCTT CTTCTTGGTT TGCTCTTCTT CTTTCTTGGC 
GGTCTGCACC CATTCGGAGT CCGAGCTCAT CTCCGAGTCC ATGGCGCCTC 
TCGCCTTCGA TGGCTGGAAC TGAAATACTA GGCATTAGCG CCACTTATCT 
TGCTTCGATT TGGTAAATTT TGCTCGATTC CTTCATCGTG GAGTTGTGCT 
GTTCTTCGTA CTGGAGGTGT GTCCTTTTTA ATGATTGCTA ATATTCTTGG 
AAAGCAGGCA CGCCTGCCAT TGCTGAACTC GATGTTTTCT CATCGATTGG 
TCGGGATATT GCCGTTGATA GATTCCCCTG CAGTGCTCCT TTTCGTCTCT 
TCCATTCTCC TCTCAAATTC GCCTTGACAT TTTGGTCGGC ACTGTACTTT 
TGTGGTGGTG GCCACTGGCC AACAATGTTC AGGCCTGGAA CGATCGCCTG 
TGTGGCTAAT TCGGCGCGCA TTTTGCTGAA AAGTTTGCGG GCTTTTATCC 
TGTTTGCTGC TCTACCGGGT CACTGCTCTG CCAGTTTTGT CTCAATTTCT 
GTGATGCTTT CTGTGCCATA GCTTTCAAAT GTTGGCTTTG GTAAGGAGGG 
GATTGAGATA GGTTGGGTTA TCTGAGTGCA CACTTCACTA AAAAGTTTGG 
ATCCTTTTGT CCATTCTGCT GTGATTCCGT CGGAATTTGG CAATTTTCGC 
ATCGGGTGGA TTCTCCCCAG CTAAGCTACG AGCAATGCTT CTCGGACTAG 
AGAAAAATCA GCACAACGGG GAGGACACAT CGCCTGAGGC CAACGATTCC 
GGCGAGCTGG ACGACCAGAG GAGCATGGAG TGCTCCACCT CCACCGAAAT 
GTCGAGCAAC AGTGGCCACA GATCAAGAAA CCGAGCTCAG GACGACGACA 
GCTTCGACTC CGAGAGCAGC TCGTCGGGCC CGCCGACGGT GAAGAGGCCG 
GCGGCGGTGA CCGCCTTGCT GCCACCGTTC TCTAGGCCGA CGCCGTCGAA 
GTGGGATGAT GCAGAGAAGT GGATTTCTAG CCCCACGGCG AACCGCGGTG 
GCCGTGTGGG GAGTGCAGCT GGGGCTGCGC CGAAGAAATC GGCGCTGGCA 
TTTCCTGAAC ATGTAAGCCG GCCTCCAGCC GTTGCTAAGG TGGTTGCTGA 
GGTCCCCATC AACACTGGAA CCTTGGTGAA GAATTCAGTT GCTCTCGCAC 
AGCCTATTTC ATTTAATCCT GCACAAAGTG CTTCGATAGT TGATGAACCA 
GCTCCTGCAG TTAGGTCTGT TTCGATGAGA GACATGGGCA CAGAAATGAC 
TCCTATTGCC AGCCAGGAGC CCTCTCGGAC TGGGACTCCT ATTATAGCTT 
CTAGTCCAAC CTCCTCTCGG ACACCAACAC CACAACGTAA TGCAGAAATC 
AGTATTGGTG AATTTGGTCC AAATAAGATG GAAATGTCTG AGGAGGAACT 
ACAAATGAAT ACAAGAAAGG AAATCATGGA TCTTGGCCAA CGGCTGGGAA 
AGACAACTAT AGCTGCATGG GCTAGCAAGG AAGAGAAATC TACAACAAGT 
TTCGCAAATG TCATAACCGA CAAGGCTGTA GAAATCGACA GAGAGGCTCG 
TGCTGCAGAT TGGGAGGAGG CAGAGAAAGC AAAATATCTT GCAAGGTTTC 
AGAGGGAAGA GGTAAAGATT CAAGCTTGGG AAAACCACCA GAAAGCAAAA 
ATTGAAGCTG AAATGAAGAG GATGGAGGCA AAGATAGAGA TCAAGAGAGC 
TCGCGAGCAG GACAGGCTTT CGAGCAAGTT GGCAGCTGCA AGGCAAGGCA 
GAGGCGAGGA GGGAGGCCGC TGAGTCCAGG AAGAACCAAG AAGCAGCAAG 
AACTGAAGAG CAGGCGGCTC AGATCCGGAA AACCGGGCAC ATACCTTCCT 
CAATCTCCTG CTGGTGCTGG TGCCTGTGAT TCTTCACTCT GCCATGATCA 
TCTGTTATTT GGGTAGAAGA AAAATACTTG CTCCTTGCAC GACCATGTAA 
AATATTCGCT ACTGGTTGGT TCATCGTTCA GTGATCAATG CCAATGAGTC 
GCCATTTTTG TCC

Gene models with high sequence identity

AT2G02170.2 [+] show detail - Remorin family protein
E-value: 2e-35; Score: 147.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	Remorin, C-terminal	2.7e-22
HMMPfam	Remorin, C-terminal	8.9e-09

See the detailed result >

AT2G02170.2

Model type: Protein coding
Short Description: Remorin family protein
Computational Description: Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 3690 Blast hits to 2594 proteins in 496 species: Archae - 6; Bacteria - 904; Metazoa - 645; Fungi - 344; Plants - 595; Viruses - 5; Other Eukaryotes - 1191 (source: NCBI BLink).
Link: InterPro Scan - TAIR