K05004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05004

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05004

Determination of introduced cDNA(s)

  • J033090B01 - Rice Full-length cDNAs - Original: J033090B01

    full reading [+] show sequence

    Nucleotide sequence: J033090B01 - full reading 
    GTTCTTGATA ATGTGCTGGC TTGAGCAATC AAGCCACAAT CCTAGACCAA 
    CATACTATGC ACGTAGTAGG AGTATACATT ATATTCCACT TTTCCACAAG 
    ATAGGGTCCA GTCCAGTATA TATATAGGGC ATGGAGAGAT GGACCATTTG 
    CAGGAGGCAG AGGTCGAGCT GAGAGTGATC GATCTTTGTT AGCTAGAGTG 
    TTGAGCAATG GCGTCCAAGC TGGGTATGGT TGTGCTACTG ATCTCGGGCC 
    TCTTTGCTGC CCGTTGCGCG GCCGTGGTGA CCACCGGCGA ACCCGTCGTC 
    GCCGGCCTCT CCTGGGGGTT CTATGACACG TCGTGCCCGT CGGTGGAGGG 
    CATCGTGAGG TGGCACGTCA CCGAGGCCCT CCGCCGCGAC ATCGGCATCG 
    CCGCCGGCCT CGTCCGCATC TTCTTCCACG ACTGCTTCCC GCAGGGGTGC 
    GACGCGTCGG TCCTCCTGAC GGGTTCCCAA AGCGAGCTGG GTGAGATACC 
    CAACCAGACG CTGCGGCCGT CGGCGCTGAA GCTCATCGAG GACATCCGCG 
    CCGCCGTACA CTCCGCCTGC GGCGCCAAGG TGTCCTGCGC CGACATCACC 
    ACGCTCGCCA CGCGTGACGC CATCGTCGCC TCCGGCGGGC CCTACTTCGA 
    CGTGCCTCTG GGGCGGCGCG ACGGGCTGGC ACCGGCGTCG AGCGACAAGG 
    TGGGCCTCCT GCCGGCGCCC TTCTTCGACG TGCCCACGCT CATCCAGGCG 
    TTCAAGGACC GAAACCTGGA CAAGACGGAC CTGGTGGCGC TGTCCGGCGC 
    GCACACCATC GGACTAGGCC ACTGCGGCAG CTTCAACGAC CGCTTCGATG 
    GCTCCAAGCC CATCATGGAC CCTGTGCTGG TGAAGAAGCT GCAGGCCAAG 
    TGCGCCAAGG ACGTGCCGGT GAACTCGGTC ACGCAGGAGC TGGACGTCCG 
    CACGCCCAAC GCCTTCGACA ACAAGTACTA CTTCGACCTC ATCGCCAAGC 
    AGGGGATCTT CAAGTCCGAC CAGGGCCTCA TCGAGGACGC GCAGACCAAC 
    CGCACCGCCG TCCGCTTCGC CCTCAACCAG GCCGCCTTCT TCGACCAGTT 
    CGCACGCTCC ATGGTCAAGA TGAGCCAGAT GGACGTCCTC ACCGGCAACG 
    CCGGCGAGAT CCGCAACAAC TGCGCCGCTC CCAACCGCCG CTCCTCCGAC 
    CTCCTCAACG CTGCCGACGA CGACCAAGGC TTCGCCGCCG ACGCCTAATT 
    AACTTATGGA GTAATTAGTG ATCGTTTTAT GTTTATGTTT TGTGCTAGTA 
    ATAATAATTA AGAGGATGCC ATCTGCGCGT GGTGTTTGGT TTCCATGCAT 
    TCTCTGCTTA GTTAGAATGG TTTTGCTTCA TAAAAAGTAA AGTTACTACT 
    CGATTCCTCG GTCGGGACAG AGTAACTGCA TGTCAAATGT ATCATCATCA 
    TCAGTTAGTG CTACATCATC ACAACTGTCT TTGTCAC

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 6e-82; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    superfamily Haem peroxidase 4.2e-101
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Plant peroxidase 1.1e-49
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.6e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.6e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.6e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.6e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 8.6e-31
    Gene3D no description 7.5e-50
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2.9e-64
    ProfileScan Haem peroxidase, plant/fungal/bacterial 65.5

    See the detailed result >

    AT1G71695.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR