K05005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05005

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05005

Determination of introduced cDNA(s)

  • J033145P14 - Rice Full-length cDNAs - Original: J033145P14

    full reading [+] show sequence

    Nucleotide sequence: J033145P14 - full reading 
    GGCGCCTTTT CCTCCCCCCT TCCTCCTCCA CCGCCGCCCA TCTCGCCGCC 
    GCCGCCGCCG CCGATGGCTC CCCCCACCGC CCTCTCTCCG GTGGCCTTCA 
    AGTCCTCCTT CTCGCCGCTC CTCTTCAACC CGACCCGTTC TAAGATAAAT 
    GTCGAAGGTG CATTCTGTTT GCCATGTTAC AATAGGAAAA AGGCTAGCAA 
    TAGATCCTTT CGCGTGTACA GTTTATTTGG GGGAAAAAAG GACAAAGACG 
    AGAATGGTGA AGAAGCACCA TCAAAGGCAG GAATTTTCGG AAATATGCAA 
    AATCTTTATG AAACTGTGAA GAAGGCCCAG ATGGTTGTCC AAGTTGAGGC 
    TGTCCGGGTG CAAAAGGAGC TTGCAGCGAC TGAGATCGAT GGTTACTGTG 
    AAGGGGAACT AATCAAGGTA ACACTTTCTG GGAACCAGCA GCCTGTAAGA 
    GTTGAAATCA CCGAAGCTGC AATGGAAGTG GGTGCTGAAA AACTTTCTGA 
    GCTGGTGAAC GACGCCTACA AGGATGCACA TCAGAGGAGT GTCCAGGCAA 
    TGAAGGAGAG GATGGCTGAT CTGGCACAGA GCTTAGGAAT GCCAGCAGGC 
    CTTGGTGATG GACTCAAGTG ATAGTGTGGT ACATGAATGC TTTTCAATAA 
    AAAAAAAAGT GTATCTCAAT TTTGTATACT AGCTGTATTG AGTCATCAGT 
    TTAAAATTCG TGGCGAGTAC TGTTAGCTGT GTAAGAACTG TAATCGAGAA 
    CATCTGATCC TGTTTTCC

    Gene models with high sequence identity

    1. AT2G24020.2 [+] show detail - Uncharacterised BCR, YbaB family COG0718
      E-value: 9e-56; Score: 213.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Uncharacterised protein family UPF0133 3.7e-19
    Gene3D Uncharacterised protein family UPF0133 3.4e-22
    HMMTigr Uncharacterised protein family UPF0133 3.4e-15
    Coil coiled-coil 0
    superfamily Uncharacterised protein family UPF0133 1.4e-19

    See the detailed result >

    AT2G24020.2

    Model type
    Protein coding
    Short Description
    Uncharacterised BCR, YbaB family COG0718
    Computational Description
    Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1).
    Link
    InterPro Scan - TAIR