K05013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05013

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05013

Determination of introduced cDNA(s)

  • J013096G12 - Rice Full-length cDNAs - Original: J013096G12

    full reading [+] show sequence

    Nucleotide sequence: J013096G12 - full reading
    GACTTCAATT TCTTCCTAGC TCAGCTTTCC CCTCTTCTCC TTCTCCTCCT 
    ACTACCCAAT ACGACTACTA CTAGTTTTCT TTCTTGGCCA TCATCATTTG
    TTCCTCATCT TACTCTAGCT TCTCCATTCC AAAATTCACC ACCGCCGGCG
    CCGCCATCTC CATTCCAAAA TTTGCTCTGC GTCGAGTCGT GTGATCGATC
    GATCGATCGA GGTGTACGTG TGCGCTGCTG GGGAAAAGGG AAATGGATCC
    GTCGGGCGCC TTCTTCCACG CGGCTCCCCG GAGCGGCTCG AATGTGTCGC
    TGGCGTCGCT GGCGAGGACG GCCGGAGGGA GGAGGATGAT GCACAGGGTC
    TTCCGCGGCG TCATCACCTT CATCTTCGCC ATAGCTGGAC TGTTTCTTGG
    AGCGGTGACT GGCGGGCTGA TCGGGCTGGC CACCGAGAGC GGCCTCTTCC
    GCGGCACCGG CATCGGCGCC ATCACCGGCG CCCTCGTCTC CATCGAGGTC
    GTCGACTCCT CCATCCGCGT CTGGCGATCC CGCCGATCCG GGATCTCCAG
    CATCTGCTAT GTGCTTAATG TGATCTACAG CCTCCTGACC GGCAGGCTTG
    TCCGCGAGAA GGTCGATCCG GCGGTGCAGC GGGTGGTCCG GAGCCAGATG
    AATGCAGTGG ATTCATCGCC CTTCAGGGAG TCCCCTGACC TGTTCGAGAT
    CGAGGGCACC AACGGCATGC CACGGGCATC CATCGACAAG CTCCCGGAGG
    TCAGGATCAC TGAGGAGTAC AGGAGGAACG CCATTGGTGA CCTCTCGGGA
    TGTTCAGTTT GCCTCCAGGA TTTCCAGACA GGTGAGAAGG TGAGGAGCTT
    GCCGGATTGC TGGCACGTGT TCCATGTGCC GTGCATCGAC GGCTGGTTGA
    TCAAGCATGG ATCCTGCCCG TTGTGCCGGA GGAAGCTGTG AGATCGACGA
    CGACGACGGC CATGGTGATC ACTGCTATAG TTGTAGCAGA AGGAGGAGGA
    GGCTGCTCTG CTTTCTTGCT GTGTGCTGCG ATCGAGTTGT CCATCAGTGT
    TGCTGTTCTT AGAGAAGAAG ACTGACATCT CTCTCTCTCT CTATATATAT
    AGAAAACCCT TAATCTATAG AGCATTTTGT TTCTGCTTAT ATTGCTACAT
    GCTCTATCTT TTTGGTTGAA CTATCTACAT ATATATCTAT ATTTCTATCT
    ACTCACTCCT TTCTCCTTAT GTAACATACC TCTCAAAACT CTGAACTGGC
    TTGTGCTGAT CATCTGATGT ATAATATATA ATATATAAAT ATATATCGCC
    CCTTGGACAC CATCGC

    Gene models with high sequence identity

    1. AT4G35840.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING FINGER PROTEIN 38 3.7e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 3.7e-16
    Gene3D no description 0.000000000000028
    superfamily RING/U-box 0.0000000000000015
    ProfileScan Zinc finger, RING-type 11.825
    HMMSmart Zinc finger, RING-type 0.00000074

    See the detailed result >

    AT4G35840.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR