K05013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05013

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05013

Determination of introduced cDNA(s)

  • J013096G12 - Rice Full-length cDNAs - Original: J013096G12

    full reading [+] show sequence

    Nucleotide sequence: J013096G12 - full reading 
    GACTTCAATT TCTTCCTAGC TCAGCTTTCC CCTCTTCTCC TTCTCCTCCT 
    ACTACCCAAT ACGACTACTA CTAGTTTTCT TTCTTGGCCA TCATCATTTG 
    TTCCTCATCT TACTCTAGCT TCTCCATTCC AAAATTCACC ACCGCCGGCG 
    CCGCCATCTC CATTCCAAAA TTTGCTCTGC GTCGAGTCGT GTGATCGATC 
    GATCGATCGA GGTGTACGTG TGCGCTGCTG GGGAAAAGGG AAATGGATCC 
    GTCGGGCGCC TTCTTCCACG CGGCTCCCCG GAGCGGCTCG AATGTGTCGC 
    TGGCGTCGCT GGCGAGGACG GCCGGAGGGA GGAGGATGAT GCACAGGGTC 
    TTCCGCGGCG TCATCACCTT CATCTTCGCC ATAGCTGGAC TGTTTCTTGG 
    AGCGGTGACT GGCGGGCTGA TCGGGCTGGC CACCGAGAGC GGCCTCTTCC 
    GCGGCACCGG CATCGGCGCC ATCACCGGCG CCCTCGTCTC CATCGAGGTC 
    GTCGACTCCT CCATCCGCGT CTGGCGATCC CGCCGATCCG GGATCTCCAG 
    CATCTGCTAT GTGCTTAATG TGATCTACAG CCTCCTGACC GGCAGGCTTG 
    TCCGCGAGAA GGTCGATCCG GCGGTGCAGC GGGTGGTCCG GAGCCAGATG 
    AATGCAGTGG ATTCATCGCC CTTCAGGGAG TCCCCTGACC TGTTCGAGAT 
    CGAGGGCACC AACGGCATGC CACGGGCATC CATCGACAAG CTCCCGGAGG 
    TCAGGATCAC TGAGGAGTAC AGGAGGAACG CCATTGGTGA CCTCTCGGGA 
    TGTTCAGTTT GCCTCCAGGA TTTCCAGACA GGTGAGAAGG TGAGGAGCTT 
    GCCGGATTGC TGGCACGTGT TCCATGTGCC GTGCATCGAC GGCTGGTTGA 
    TCAAGCATGG ATCCTGCCCG TTGTGCCGGA GGAAGCTGTG AGATCGACGA 
    CGACGACGGC CATGGTGATC ACTGCTATAG TTGTAGCAGA AGGAGGAGGA 
    GGCTGCTCTG CTTTCTTGCT GTGTGCTGCG ATCGAGTTGT CCATCAGTGT 
    TGCTGTTCTT AGAGAAGAAG ACTGACATCT CTCTCTCTCT CTATATATAT 
    AGAAAACCCT TAATCTATAG AGCATTTTGT TTCTGCTTAT ATTGCTACAT 
    GCTCTATCTT TTTGGTTGAA CTATCTACAT ATATATCTAT ATTTCTATCT 
    ACTCACTCCT TTCTCCTTAT GTAACATACC TCTCAAAACT CTGAACTGGC 
    TTGTGCTGAT CATCTGATGT ATAATATATA ATATATAAAT ATATATCGCC 
    CCTTGGACAC CATCGC

    Gene models with high sequence identity

    1. AT4G35840.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING FINGER PROTEIN 38 3.7e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 3.7e-16
    Gene3D no description 2.8e-14
    superfamily RING/U-box 1.5e-15
    ProfileScan Zinc finger, RING-type 11.825
    HMMSmart Zinc finger, RING-type 7.4e-07

    See the detailed result >

    AT4G35840.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR