K05015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05015

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05015

Determination of introduced cDNA(s)

  • J023109J17 - Rice Full-length cDNAs - Original: J023109J17

    full reading [+] show sequence

    Nucleotide sequence: J023109J17 - full reading 
    CACTGAGCCC GCATCGTCTC GTCTCCCTCT CCCTCTCCCA CCCCGCCTCC 
    CTCCTCGACG AGCTCCGAGC GGCGGCGATG GCGAGCGACG GCGCGGCGGC 
    CACGCCGGCG AAGGCGAGCC CGAAGAAGGC CAACCTCCTC GACCCCCACT 
    CCATCAAGCA CCTCCTCGAC GAGACCATCT CCGACGTCGT GAAGAGCAAG 
    GGCTACGCGG AGGACACGCG GCTGGGCAAC TGGAAGCTGG CGATTGGGGC 
    GGCCGTGATC GCCATCGCTC TCCTCGCGCA GTTCTACCCG AAGAAGTTCC 
    CCCAGAACCG CGAGTTCCTC CTCGGCTGCA TCGCATTATA TGTGGTGTTG 
    AATGTGGTGC TGTTGATACT TAGCTATACC AAGGAAAAGG ATGCCATTAT 
    GTTCACACAC CCTCCTGCGG GTTCTTTCAA TAGCACTGGA CTAGTTATAT 
    CTTCAAAATT ACCAAGATTC TCGGATATGT ACACTATCAC AATAGCCAGT 
    GCAGATCCCC AGTCTATTTC CGCCAATAAG CCAGTTCATT TCACTAAGAG 
    TGTTACAAAA TGGTTTACTA AGGAAGGAGT TCTCGTGGAA GGCCTGTTCT 
    GGAAGGATGT TGAGAGGTTG ATTGATGACT ACAACACTGA GCGCAAGGGC 
    AAATGAATGG GTAGTCCATG TGACTATGAG ACGTTAATTG TCTAGAAAAG 
    AAACCCTCTT GTGGAATTCC TTGCTTGGAA GAATCCTTAG CTTAATCAAA 
    ATAGACAATT TTGTCATACA TTACTGTTTC ACTGGTGATT GAAATACTGT 
    CGAAGACACC CGGTACCATC CC

    Gene models with high sequence identity

    1. AT2G39960.1 [+] show detail - Microsomal signal peptidase 25 kDa subunit (SPC25)
      E-value: 1e-56; Score: 216.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Microsomal signal peptidase 25kDa subunit 4.4e-46
    HMMPanther MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT 8.3e-47

    See the detailed result >

    AT2G39960.1

    Model type
    Protein coding
    Short Description
    Microsomal signal peptidase 25 kDa subunit (SPC25)
    Computational Description
    Microsomal signal peptidase 25 kDa subunit (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus; CONTAINS InterPro DOMAIN/s: Signal peptidase complex subunit 2 (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 25 kDa subunit (SPC25) (TAIR:AT4G04200.1); Has 283 Blast hits to 281 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 36; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR