K05018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05018

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05018

Determination of introduced cDNA(s)

  • J033007H18 - Rice Full-length cDNAs - Original: J033007H18

    full reading [+] show sequence

    Nucleotide sequence: J033007H18 - full reading
    GGCACAAACA AAGCCACCCA AAAAAGTTGG GGAGAGGAGA GACCGAGATC 
    GATCCGCACC CACCGCGACA AACGCTCTCC CCTCCCCTCC CCTCCCCCTC
    CGCCCTTCGC TCCCATCCGC TCCGCCCCCT CGCCGCGCAG CGCCGGCGGC
    GAGAAGGTTG AGTTCGTGGG GGGTGTGACC GAACGATGGC GTACCGGGCG
    GACGACGACT ACGACTACCT CTTCAAGGTG GTGCTCATCG GGGACTCCGG
    GGTCGGGAAG TCGAACCTGC TGTCCCGCTT CACGCGCAAC GAGTTCAGCC
    TCGAGTCCAA GTCCACCATC GGCGTCGAGT TCGCCACCCG CAGCATCCAC
    GTCGACGACA AGGTCGTCAA GGCCCAGATC TGGGACACCG CCGGGCAAGA
    AAGATATCGA GCTATTACAA GCGCATACTA TCGCGGAGCA GTAGGGGCAC
    TCGTTGTCTA TGATGTCACG CGACATGTCA CCTTTGAGAA TGTGGAGAGG
    TGGATGAGGG AGCTCAAGGA TCACACGGAC GCCAACATCG TGATCATGCT
    TGTGGGGAAC AAGGCAGATT TGCGCCACCT TAGGGCTGTC TCGACTGAGG
    ATGCGAAAGC ATTTGCTGAG AAAGAGAACA CTTTCTTCAT GGAGACGTCG
    GCCCTGGAGT CAATGAATGT GGAGAATGCC TTCACTGAAG TGCTCACCCA
    GATATATCAT GTAGTGAGCA AGAAGGCTCT TGACATCGGC GATGACCCAG
    CTGCACCACC AAAGGGGCAG ACCATCAATG TTGGTGGCAA AGATGATGTC
    TCTGCAGTGA AAAAGTCTGC TTGTTGTTCA TCAGCGTAGA TCGAAAGGAC
    TTGACAAACA TGGAGATACC CGAGGTGGTT GATACTATGC AGTAGGACAC
    AGGATGTTAT TGCATTCATA GACCTCATCT GTATTCATGT GTTACTAAGT
    GTCTCCTTCG TTTTGCCATT TGAAACATTA ATTCATTCAG GACATAATCT
    TGCCGGTATA GTTTAGGGAT ATGAAATTGT GAGGCCGTCA GATTTTCATA
    CAGGCCATTT GTTTGCTTCT ATTATGGTTT GACCGCTTGA TTTATTTATA
    TGTTGCTGTC TATTTTTCAG TAGC

    Gene models with high sequence identity

    1. AT5G60860.1 [+] show detail - RAB GTPase homolog A1F
      E-value: 2e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-63
    HMMTigr Small GTP-binding protein 1.9e-39
    HMMSmart Ras small GTPase, Ras type 3.6e-29
    HMMSmart Ras small GTPase, Rab type 5.4e-113
    HMMSmart Small GTPase, Rho type 0.0000000000047
    HMMSmart Ran GTPase 0.00000000000075
    ProfileScan Small GTPase 35.971
    HMMPanther Rab11-related 6.1e-93
    HMMPanther RAS-RELATED GTPASE 6.1e-93
    HMMPfam Ras 3.2e-63
    Gene3D no description 2.2e-65
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42
    FPrintScan Ras GTPase 1.5e-42

    See the detailed result >

    AT5G60860.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A1F
    Computational Description
    RAB GTPase homolog A1F (RABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1G (TAIR:AT3G15060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR