K05038

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05038

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05038

Determination of introduced cDNA(s)

  • J013055I05 - Rice Full-length cDNAs - Original: J013055I05

    full reading [+] show sequence

    Nucleotide sequence: J013055I05 - full reading 
    GCCTCCTCCC CCTCTCCCGT CTCCGCTACT CCAAACTTAA TTTTGATTTC 
    TCGCCGGAGA ATTCCTCCTC CGCCTCCCGG CTCCTCCCCT CCGCCCTCGC 
    TTCCGCAGGC GAACTAAACC ATGGCGACAG GTCAAATTTT CTCCAAAACC 
    ACCCAAGCGT TATTCTATAA TTATAAGCAA CTTCCGATCC AACGGATGCT 
    TGATTTTGAC TTCCTATGTG GGAGAGAAAC ACCTTCTGTT GCTGGAATAA 
    TCAATCCTGG TTCTGATGGG TTTCAGAAAC TTTTCTTTGG ACAAGAAGAA 
    ATTGCCATTC CAGTTCATCC TACAATTGAA GCTGCCTGCA ATGCACACCC 
    AACTGCTGAT GTATTTATCA ACTTTGCATC CTTTCGGAGT GCTGCCGCTT 
    CTTCAATGTC AGCTTTGAAG CAGCCAACAA TCAGAGTTGT AGCCATCATA 
    GCAGAGGGTG TTCCTGAATC AGATACAAAA CAACTTATTA GTTATGCACG 
    TGCCAACAAC AAGGTAATCA TTGGACCAGC AACAGTTGGA GGAATCCAAG 
    CTGGTGCTTT CAAGATTGGT GATACTGCTG GAACCATTGA CAACATTATT 
    CAATGCAAGC TTTACAGGCC TGGATCTGTT GGCTTTGTTT CTAAATCGGG 
    TGGCATGTCA AATGAGATGT ACAACACCAT TGCCAGAGTG ACAGATGGTA 
    TTTATGAAGG AATTGCAATT GGAGGGGATG TTTTCCCTGG CTCAACTCTG 
    TCAGACCACA TCCTGCGTTT CAACAACATA CCTTAGGTCA AAATGATGGT 
    TGTTCTTGGG GAGCTTGGAG GAAAAGATGA GTATTCTCTT GTTGAAGCCC 
    TGAAACAAGG AAAGGTTCAG AAACCTGTTG TTGCATGGGT TAGTGGGACA 
    TGCGCTCGTC TATTCAAGTC TGAAGTGCAG TTTGGCCATG CTGGTGCGAA 
    AAGTGGTGGT GAGTTGGAAT CAGCACAAGC TAAGAACCAG GCACTAAAAG 
    ATGCCGGGGC AGTTGTCCCT ACTTCATATG AAGCTCTTGA AACTGCGATC 
    AAGGAGACAT TTGAGAAACT GGTTGAGGAC GGAAAGATCT CTCCTGTTAC 
    TGAGATTACA CCACCTCCTA TTCCAGAGGA TCTTAAAACC GCAATTAAGA 
    GTGGGAAGGT CCGAGCTCCC ACACACATTA TCTCCACTAT CTCGGATGAC 
    AGAGGCGAGG AACCCTGCTA TGCTGGTGTC CCCATGTCTA CAATTATTGA 
    ACAGGGTTAT GGAGTTGGTG ACGTTATTTC GCTTTTGTGG TTCAAGCGCA 
    GTCTTCCTCG TTACTGCACT CAGTTTATTG AGATGTGCAT CATGCTTTGC 
    GCTGATCATG GTCCTTGTGT ATCCGGTGCT CACAATTCTA TAGTTACTGC 
    TAGGGCTGGA AAGGACCTTG TTTCCAGCTT GGTATCTGGT TTATTGACAA 
    TTGGCCCCCG TTTTGGTGGT GCAATTGATG ATGCTGCCCG GTACTTCAAA 
    GATGCATATG ATAGAAATCT CACACCTTAT GAGTTCGTTG AGGGTATGAA 
    AAAGAAGGGA ATCCGTGTCC CTGGGATTGG TCACAGGATC AAGAGCAGAG 
    ACAACAGAGA TAAGAGAGTG CAGCTTCTAC AGAAATATGC CCACACACAT 
    TTCCCTTCTG TCAAATACAT GGAGTATGCT GTCCAGGTTG AGACCTACAC 
    CCTGTCAAAA GCCAACAATT TGGTTCTGAA CGTCGATGGT GCGATTGGGT 
    CGCTTTTCTT GGATCTTCTT TCTGGCAGTG GAATGTTCAG CAAACAAGAA 
    ATCGATGAGA TTGTTGAGAT TGGTTACCTT AATGGACTCT TTGTGCTTGC 
    GCGTTCAATT GGTCTCATCG GGCACACCTT TGACCAGAAG AGGCTCAAGC 
    AACCACTCTA CCGCCACCCA TGGGAGGATG TCCTCTACAC CAAGTGAAGA 
    CTCGGTTGTT CTTAATATTA CCTAGATATT CCAGCTTTGT ACACACTTCA 
    AAAGGTCAAG CGAAATTGCA TAAAAGTGAA CGCCGATGAA ACTAGGGGGA 
    GAAGAATGGG GTCACCGGTG ACCGCTGTTG TTGCGTGTTT CAAGTTAGTT 
    GCAAATTGAG ATCTGTTCCT GATTTTTGTC AAAGCAAGAA CCATTAGGAC 
    AACATGGGGG ATATTGGAAA TTTACTGTAT CATCGTGTAC TATCGATTCT 
    CTCAACGAAA AAAAAAATCT AGTCTGATGC TAATGTGTTC ACCGGTCGTG 
    GAGAGTGTTG TAATGTTTGT GATTGTCAAT GTGCCACTTC GATAGGCATC 
    ATTTTTGCTA TTAAAAATAA AATAAAATTT GCATGTCTTT CCTGCT

    Gene models with high sequence identity

    1. AT5G49460.1 [+] show detail - ATP citrate lyase subunit B 2
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ATP-CITRATE SYNTHASE 5.2e-139
    HMMPanther ATP-CITRATE SYNTHASE 7.8e-264
    PatternScan Succinyl-CoA ligase, alpha subunit 0
    PatternScan Succinyl-CoA synthetase, beta subunit, conserved site 0
    PatternScan ATP-citrate lyase/succinyl-CoA ligase, active site 0
    HMMPfam CoA-binding 7.7e-05
    HMMPfam Citrate synthase-like 3.1e-19
    HMMPfam ATP-citrate lyase/succinyl-CoA ligase 6.2e-05
    Gene3D NAD(P)-binding domain 0.00012
    Gene3D Succinyl-CoA synthetase-like 2.6e-14
    Gene3D Succinyl-CoA synthetase-like 3.6e-18
    Gene3D Citrate synthase-like, small alpha subdomain 1.6e-05
    superfamily NAD(P)-binding domain 3.9e-22
    superfamily Succinyl-CoA synthetase-like 7.7e-11
    superfamily Citrate synthase-like, core 3.8e-60

    See the detailed result >

    AT5G49460.1

    Model type
    Protein coding
    Short Description
    ATP citrate lyase subunit B 2
    Curator Summary
    One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)
    Computational Description
    ATP citrate lyase subunit B 2 (ACLB-2); FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: cytosol, citrate lyase complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), Citrate synthase-like, small alpha subdomain (InterPro:IPR016143), Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), Citrate synthase-like, core (InterPro:IPR016141), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Citrate synthase-like (InterPro:IPR002020), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase B-1 (TAIR:AT3G06650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR