K05119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05119

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05119

Determination of introduced cDNA(s)

  • J013108P03 - Rice Full-length cDNAs - Original: J013108P03

    full reading [+] show sequence

    Nucleotide sequence: J013108P03 - full reading 
    GGCTTGGCCG GCAATAGAGA ACAAACTCTC CACCTTCTAA CCGCTTCCTT 
    GCTTGCTGCC ATAAGCCGCT GAGGTCACCA CGGGCGGCCG ACCACCACCG 
    CTGCCGACCC ATGTCGCCGT TCGCGGCCGC CCGGCTGACC ATGCATGACC 
    CTCGTCGGCC TCCTCGCGTA GGTCACTGCT GGCCTCCTTG CACCGTGGGC 
    CACAGCCTCA CGCCGCGTCA GTCGTGCCTC GCCAGCAATG GCCATGCATC 
    GCTCCAGCTA GATCCATGTG CCGCCGGCCG CTGCCTTGCA CACCACCGTC 
    CGCCACCTCA CACGCCGTCA GTTGCGTGGC CTCCAACACC TGCCGACGAG 
    CCGTTGTTGT CGCCGGCTCT GACCAGATCT GGCAGGAGAC ACCAGATCCG 
    GCCACGCGCC ACCGGTCGCT AGAGCCCACT CCCAAAGTGC CACCGGCTCT 
    CCCTCTTTGC CTCCCGGTGC TGCGGCGGCT GTCCCCGAGG CCATGGGATC 
    AGGCCTCAGA CCTCCGGGGG GAGAGGGAAG GCCCCGCTGC CGCTGTCCTT 
    GCAGTTACAT GGTTTTCCGG CGGCTTGCTC AGGCGGCGGT GAGGTGGAGA 
    AGGGAGGAGG TGGTGGGTGG CAGCAGGGGA GGGAGACATC GCCCATGTCG 
    CCCAATCCTA GAGCGACGCA GGGGCGCAAA TGGATGGTCT CTCCTCTGTG 
    CTCTTCTTCC CAGCATATCT CAATAATTCA GTTGCTGGGG AGTACCACAT 
    GCATCAGATG CCGTGTTGGC ACATTGTAAG AGAGCAAAGG AGCCTTGAGG 
    TGGTGATTCA AATTGTGGTG CAAATTACAC GTGGAGTTGA AGCATATGCA 
    TGGAGTAGCC ATGGGCTAGC TAGCTAAGCT GCTTACCAGT GGATGGTAAC 
    ATTGTGAGCT ACATGATTGA CGACCTTGAC TAGGACATTA TCGCCTTCTC 
    TTGCATACAG GGTTGGCCCC GGGAACTTGC CATTGACAGT GAGGATAGGC 
    TTGGTTGAGC AAAGCCGTGT CATGTTCCGC ATGACCACCT GCACAAGACA 
    CAGAAAAGAC AGACAAAACC GTGTTATCAT GCGGCAAAGT TTGATGACGA 
    TATATCCTCA CATTGAACTT GTAATGCCGG GTGATGGCGT GGGCGCTGAG 
    AGCCTGAAGC AGGAAGCAGG CGGCCATGAG GAGCAGGGAG AGCCGGCGTG 
    ACTCCGGCAG GACGGCCATG TTTGCTGCGT GACCAGCGGC AGGGGAAGGA 
    GAACTAAGAG CTGGTGAGAG TGCAGTGCAG TGCATGGAAA TACGGAGGTA 
    ACGAATGCTT ATAATGGCGC ACTGGCTAGA TAGGAGGGAA TGGGCGGTGT 
    TGGGTTTTTA GCTGCCATGT CGTTTTAAAA TTTAGGTGGG GAAGCCTTGC 
    TTAACAAGGC TAGGAACCTT CTGATTCATT TACTTTCACG ACCATTCGCC 
    TAAATTTTAC CAGCCCAATC CCAGCTGCTG CTGCTTCTGT ACATGCCTGA 
    TAGTGCATTC CTTCAGTACC ACATAAAGCT ACCTACCCGA TTACTCCACT 
    ATGCTGCCGC ACCCAGTTTC TGGCTGTTCA TACTTGGTGA AACCTTCACT 
    TAATTAGCTA TACATACACT CTTGTTTG

    Gene models with high sequence identity

    1. AT2G38080.1 [+] show detail - Laccase/Diphenol oxidase family protein
      E-value: 2e-15; Score: 21.60

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cupredoxin 2.7e-09
    HMMPfam Multicopper oxidase, type 3 2e-14
    superfamily Cupredoxin 1.6e-10

    See the detailed result >

    AT2G38080.1

    Model type
    Protein coding
    Short Description
    Laccase/Diphenol oxidase family protein
    Curator Summary
    Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
    Computational Description
    IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR