K05120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05120

Determination of introduced cDNA(s)

  • J033087A12 - Rice Full-length cDNAs - Original: J033087A12

    full reading [+] show sequence

    Nucleotide sequence: J033087A12 - full reading 
    GACTCCGCTC CTCGTCCTCC TCCTCCTGCA AGCTTCCTCC CTCCTCGCGG 
    CCATGGCGGC GCCGTTCGTC TACTGCCGCC CCACCGACGA CGGCACCAGT 
    GAGAGCGCTC TCCTGAGGGC GGCCTTCGAC GGGAACCTCG GACGCCTCAA 
    AGGTATTTTA AAGAGCCTTG GGATCGAGAA AGGAAAGACC CAGTATGCAG 
    TCTTAGCTCT TAACAAGCAT GGGATTGGGA TGCTGCACGC CGTGGCATGC 
    CAGGGCCATC TGAATGTTTG CAAGTTCTTG GTGGAGGAAT TGGGGGGTGA 
    CGTGAATATT GCTGGAAAAG AAGATATAAC ACCGTTTATG GCCGCTGCTG 
    AGTCTGGTGA TGTTCCTACG GTGCAGTATT TTCTTGATCA TGGTGGTGAT 
    GTAACAAAAG CAGATGTTAG AGGATGCACA GTTCTCCACC ATGCTGCTGG 
    CACAGGATGC TGTAAGGTAA CAGAGTTCTT GCTTTCAAAA GGGATACCTG 
    TTGACATAGA CTGTGGCCTT GGAACACCAC TCTTTCATGC TGCTAACAAT 
    GGCAAGGATA AGACACTGAA GATTTTGTTG GATCACAAGG CAGATTGGCT 
    ATTTGTGACA GACATTTGAA GAGTATTGAC ATATTATCTT CAACAACGGG 
    AGACGACGAC AGGATTCTCG AGAACCCGGC CGACGTCCTC GTAATCGTTT 
    GCCGGAACCA AGCAACCCAT CGTCATCGTC ATCATCCTCT AGATGTTGAT 
    CTAGAGCTTA AATAATGAAA GATTTTAATA AAGCTCCATG TCAACTTTGT 
    ATTAGAGTAA CTGGCTAGTA GATCAGTCTA GGTTCTTAGT CAGAGCTAGA 
    TACACCAAAA GTAATTTGGC TAGTAGATGA GAGGATAACA AAAGTGTCCA 
    TCTTGGACTA TAGATAGCAA AAGTAGGCTG TCTTGATTGG AGAAGTTATC 
    AGGTAGAACG CTTCTTTTTG CCCTTTGTCT GAATGAAGCC ATAGTCAGTG 
    CTTTCTTCTT CATCATTTTC CTAAAAAAGA AAAACAGAAT CCTTATCAAA 
    GTATATTACT AAGGAACCAG CAATTCTTTC TCATGCAATA CTTAGCACAA 
    TGCAGGCAGT AGGTTTGGCA AGTATGAGAC CCCTAGTGTC AGCCATATAT 
    GTGAATAGTA CATGTAAATA GAGAATAGTT GTTGACCACA GGGTATACAC 
    TTGCTTGAAT ATTTCATTCC ATTATCTAAA AAAATACACT TGATTGAAAT 
    GGTGCCAAGC TTGTGCACAG TACAGTTAGT AGGTTAATTG TATGATTGAA 
    GAATGAAAAA CAAATGAATT TAAATATGAT CAGTTGTTT

    Gene models with high sequence identity

    1. AT3G04710.3 [+] show detail - ankyrin repeat family protein
      E-value: 7e-25; Score: 112.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ANKYRIN REPEAT-CONTAINING 0.000000000003
    ProfileScan Ankyrin repeat 9.751
    ProfileScan Ankyrin repeat-containing domain 22.623
    superfamily Ankyrin repeat-containing domain 1.6e-31
    Gene3D Ankyrin repeat-containing domain 1.6e-27
    HMMSmart Ankyrin repeat 1.1
    HMMSmart Ankyrin repeat 0.0041
    HMMSmart Ankyrin repeat 0.093
    HMMSmart Ankyrin repeat 6.9

    See the detailed result >

    AT3G04710.3

    Model type
    Protein coding
    Short Description
    ankyrin repeat family protein
    Computational Description
    ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1).
    Link
    InterPro Scan - TAIR