K05208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05208

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05208

Determination of introduced cDNA(s)

  • J013002N10 - Rice Full-length cDNAs - Original: J013002N10

    full reading [+] show sequence

    Nucleotide sequence: J013002N10 - full reading 
    GACTCCACCA CCCCACGCTT CCTTCGCCGC TAAGTATATC CCTCCCGGCG 
    ACCGCGAATC GGATCTTGAG AGTGAGAGAG AGGTTGGGGG AGGTGGATGA 
    GAGGGCGGAG ATGACGGTGA TGGAGCTCAA GAAGCTGCCG CTCGGGTTCA 
    GGTTCCACCC CACCGACGAG GAGCTCGTCA GGCACTACCT CAAGGGGAAG 
    ATCACGGGGC AGATCAGGAG CGAGGCCGAT GTCATCCCCG AGATCGATGT 
    CTGCAAGTGC GAGCCGTGGG ATCTCCCTGA TAAGTCTCTG ATCCGCTCCG 
    ATGATCCGGA GTGGTTCTTC TTCGCGCCGA AGGATAGGAA GTATCCCAAT 
    GGGAGCAGGT CGAACAGGGC GACGGAGGCC GGGTACTGGA AGGCCACCGG 
    GAAGGACAGG GTGATCAGGT CCAAGGGTGA CAAGAAGAAG CAGCAAGTAA 
    TTGGCATGAA GAAGACGCTC GTGTTCCACC GGGGGCGTGC GCCGAAGGGT 
    GAGCGGACTG GGTGGATCAT GCATGAGTAC CGCACCACCG AGCCGGAGTT 
    TGAGTCCGGT GAGCAGGGAG GTTACGTTCT CTACCGGCTG TTCCGAAAGC 
    AAGAGGAGAA AATTGAGCGA CCCAGTCCGG ATGAAGTGGA TAGAAGTGGA 
    TACTCACCCA CTCCTTCTCG TTCAACTCCT GATAACATGG AACCAATTGA 
    AGACGGAAAT ACACCATTAA ACAGGGAATC TCCAGAATCT GCTCTGCATG 
    AAAGCCCAAT TGATTTGCCT GCTCTAACTG AGGCTCAAGC TGCGCCAATT 
    ACAAGGTGGC TTGCAGACAG AACTGATAAC GCGACAACAA ATGAAGTAAA 
    CATCTCTCAC ATGCCTCATC ATGGGCTTGA TGGAGGAGCT AAGGCTAGCC 
    CTTCAGCTGG TGCTTTCCCT CAGCTGATTG GTTCACAACA GAATATCCAT 
    GATAATAATG AATTAGCCAC AGTTTCTGCA CCCATGCTAC CACATGAAGA 
    CTTCAATAAT TTCCCTCTAG GAGCCATTGG TAATTTTGAT GGCCATATGA 
    ATCCTCGAGA TCCAGTGGAG GAGTTCTTGA ATCAAACCAT TGCTGATCCA 
    GATGAGCATT CATCAACAAC ATCAAAGGCT CAGTATGATT CGGACACTGG 
    AATCATACCA ACTGAGTTTG AGAACCATGG GGTGATGCAG GGTGAATTCA 
    TGGATGATCT GAGTGGGTTG GAAAATTTAG ATTTCTGGCC AGATGACCGA 
    AATCCCCAGT TGAGTGCACT GTATGAGGAC ACACCATTGC TGCCTTATGA 
    TAGCACCGAC CAGGATGTGC TCTCCATGGA CTCTGGTGCT GAATCCTTGC 
    AAGATCTATT CAACAGCATG GACGATTCAA ACGCGAGGAA TAATGTATGG 
    GGCAACGAAC CATTCCTCCA GGGGACTGGA TTTCCCATGT CTTGGCCGTT 
    ACAGCCGAAC TCCGCATTTC CAAACCGGGG CACTGCAAAT AGGAGGCTCA 
    TGCTACAGCT ATCAGAATCA TTATCTCCTG ATTTTGATGT GAGCATGACT 
    AGAGATGAGT GTGAAGATGA GGAACCAGGT ATTGTTGTAA CTTCGAAGTA 
    TGTGAATGAA GCTCCTGAGG AGTCAACTGC AGAAAAGGAT ATGCCTTCTG 
    ATGGAGATGA TGCTGAGCCA ACGGGTATTA CTATCCTGAG GCGACGCCAT 
    GCTCCAACTG CAAGTTCGTT TTCTGATGGA GATGATGCTG AGTCAACGGG 
    TATTACCATC CTAAGACAGC ACCAAGCTCC AAATGCAAGC TTGCTTTCTG 
    ATGGAGATGA TGCTGAGTCA ACGGGTATCA CTATCCTAAG ACGACGCCAA 
    GCTCCAACTG CTAGCTCAGC TAGTTCATTT ACTCAACAGG GTGCTGCAGT 
    GCAAAGGGTG CGGCTACAAT CAAACCTTGA TGCAGCACCG TGTTCTAGCG 
    TTGATGGTTC ATCAAGTTGC ATCATAAATG AAGGTGAAAG TGAACGCACC 
    ATGGAGAAAC CTGAGATTGA AGAGAATGCA GGAAGTACCT TGGCTGAAGG 
    TGGGACTTGC CATGAGGATG ACCAGAAGGA GCATGATGCT TCAGCAGCAA 
    ATGCTAAATC TGTTCTGAGG CTGCGGAAGA CAGCAGAGGG AAGCGACAAG 
    GAGAACAAGC AGGAGGAAGA GGAGGGTGTT CTTGCTTCAC ATGTGAGAGC 
    ACCAGGGAAT AAGAGGGGAT TCCCATCGTA CATCATTTGG CTGGTTCTCT 
    CTGTGGCTCT GGTCCTGCTT ATCTCCCTTG GGATTTATGG ATGGGTGTAA 
    ACAGCTGCTC CCCTGATGGT CTTCAAGATG ACCATGCTTA CTGGCACAGG 
    CTCCCAACAT TGACCTGCTG TGCTGAGTGA CCTGTTGTAC ATATTGCGTC 
    TTACGCCCTT GTGTTTAGAC GGCGGTTGCT AGACACCCTG GAGTGTTTGT 
    TCCCCTTCCA GCGTGCTGCG GCAGAAGAAA AATCCAAAAA CAAAAAAAAA 
    AAGAGGGGCG AAAACGAAGA AAAAAGAAGA GGTAGTGAAT GAGGAAAGTT 
    GTTGTAGATG TTCTGTGACT TAGGTGCATG GTAGTATTCC TTCCTGCTGT 
    TATTGCAGAT GTTAGTAGCC ACATACCCTA GTTGTTCAGC AGTTGTAAGT 
    CAGGTTAGGG ATATGGTTAC TTTTGTCTAT GTAATGTTCT GTAGCATTAT 
    CTGAACCTGC TTTATCGGAT GCAATTTCGT TTTCCTTTCA GTAAATCTCT 
    GTGCTGCAAA CTGTAGTTCC TGTGTAAGTT TTGATGTGTG AAATGTTAAT 
    ACTTCTAGTA CTAATATACT ATTGATGATG

    Gene models with high sequence identity

    1. AT1G33060.2 [+] show detail - NAC 014
      E-value: 2e-63; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan No apical meristem (NAM) protein 57.532
    superfamily No apical meristem (NAM) protein 3.7e-63
    Coil coiled-coil 0
    HMMPfam No apical meristem (NAM) protein 2.7e-50

    See the detailed result >

    AT1G33060.2

    Model type
    Protein coding
    Short Description
    NAC 014
    Computational Description
    NAC 014 (NAC014); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC transcription factor-like 9 (TAIR:AT4G35580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR