K05221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05221

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05221

Determination of introduced cDNA(s)

J033130D18 - Rice Full-length cDNAs - Original: J033130D18

full reading [+] show sequence

GGGATGGCTC AAGAGGGAGC TCAGTTCTTC ACAAGTAAGC TGAAATCGTC 
AGCAGAGCAA TTGCTAAATA ATCGAAGACC GAATAAAGTG ACTGTCAAGA 
TTTTTTCAAG GCGTACATCA AAATGGGAAA ATTGGTGGCA GCAATAGGTA 
AATTGCTCTG CTGTGTACAA GTTGACCAGT CAACAGTAGG CATCAAGGAA 
AGATTTGGGA AATATGAGGA GGTGCTTGAT CCTGGATGTC ACTGCGTGCC 
ATGGATTATT GGAAGCCGTG TTGCTGGTGA GCTTACACTA AGGCTTAGGC 
AGCTAGATGT ACGTTGTGAG ACAAAGACAA AGGACAATGT TTTTGTTACG 
GTTGTTGCAT CCATTCAATA TCGAGCAATG GAGGACAAAG CAAGCGATGC 
ATACTACAAG CTGAGCAACC CAAAATCCCA AATCCAATCT TATGTCTTTG 
ATGTTATCAG GGCAAGTATT CCCAAACTAG AATTGGACGA TGCTTTTCTG 
CAAAAGAATG AAATAGCAAG AGCTGTGGAG GAGGAGCTTG AGAAGGCAAT 
GCTAGCTTAT GGTTATGAGA TTGTGCAAAC ACTGATTGTT GACATAGAAC 
CAGATGAGAA AGTTAAGAGG GCGATGAACG AAATTAATGC TGCTGCAAGG 
CTACGTGTTG CAGCAAATGA GAAGGCAGAG GCAGAGAAGA TCATTCAGAT 
CAAGAGGGCC GAGGGAGAGG CTGAAGCCAA GTATCTGTCT GGGCTTGGTA 
TTGCAAGGCA GCGGCAGGCT ATAGTTGATG GGCTAAGAGA CAGTGTACTT 
GGCTTCTCTG GCAATGTTCC TGGGACTTCA GCTAAGGATG TGATGGATTT 
AGTCCTGCTG ACGCAGTACT TTGACACTAT GAAAGAGATC GGTTCAACAT 
CCAAATCTTC AGCAATTTTC CTCCCTCATG GCCCTGGTGC TGTTGCAGAT 
ATTGCCAGTC AGATCCGTGA TGGATGTCTT CAGGCTCATC AAACAAAGTG 
AAAAATCCAA GGAAGCAGTA ACTTGGATTG GTGAGGGCCT TTCCACTGGT 
TTGTATGTGC TTGAGGATAT TGTGTGAGGT TGTAAAAATA GTATCAAGCT 
TGTAGAATAG TTTGTGCTTA ATGTAGATCA GGTATTCTCT GGGATAGGTT 
CCAATCCATA CGGAATGAAG AATGTGTGCT TTACATGAAT CTAGTTGATG 
GTTGTGGTGT GCTTACATAC AGTATGCTGC ATGTGTGCTG TGAGAAAAAT 
AATGTTGTCA GCCTGTATAT CCTCAATATA TAGCCTTGAT TGCG

Gene models with high sequence identity

AT5G62740.1 [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
E-value: 3e-119; Score: 425.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	STOMATIN-RELATED	2.2e-87
Coil	coiled-coil	0
HMMPfam	Band 7 protein	8.7e-32
HMMSmart	Band 7 protein	2.5e-36

See the detailed result >

AT5G62740.1

Model type: Protein coding
Short Description: SPFH/Band 7/PHB domain-containing membrane-associated protein family
Computational Description: HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1 (HIR1); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT1G69840.7); Has 5648 Blast hits to 5647 proteins in 1784 species: Archae - 171; Bacteria - 3783; Metazoa - 267; Fungi - 306; Plants - 270; Viruses - 3; Other Eukaryotes - 848 (source: NCBI BLink).
Link: InterPro Scan - TAIR