K05232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05232

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05232

Determination of introduced cDNA(s)

  • J013169G24 - Rice Full-length cDNAs - Original: J013169G24

    full reading [+] show sequence

    Nucleotide sequence: J013169G24 - full reading 
    TCCTAGCTCC ACCAGCCATT TCTCCCCCCC ATCTCCTCTC TGCTTGCGAG 
    CTTGTCAACC GCGCAAAGGT TCATATATAC ACCGATCGAA ATCGATCGGT 
    GTAGAGCCAC ACTCTTGGAG TCGATCGTTC GCTGGTTAGC TAACTAAGCT 
    AAGCTGAGCT GCCTTGCTCT CTTCGACGAT CAGGTTGCTT GGTTTGACGA 
    GCTGACGATC GAGGAGAAGA GGACGGCGAA CGTTTTTTTG CAGGATCAGT 
    ACTAGGGTTC ATCTTGGAGA ACCAATTTGA TTCGATAGAA CGAGCGAGTC 
    GAAGAAGATG GTGCTCGCGA GCACGCCGAA GGTGGTGCTG GGATGCGTGG 
    CGTTCACGAT CTTCTGGGTG CTGGCCGTGT TCCCGTCGGT GCCGTTCATG 
    CCGGTGGGTC GCACGGCGGG GTCCCTCCTG GGCGCCATGC TGATGGTGCT 
    CTTCCGCGTG ATGACACCCG AGGAGGCGTA CGCCGCCATC GACCTCCCCA 
    TCCTCGGCCT CCTCTTCGGC ACCATGGTCG TCTCCATCTT CCTGGAGCGC 
    GCCGACATGT TCAAGTACCT CGGCAACATG CTGTCGTGGA AGAGCCGCGG 
    CAGCAAGGAC CTCCTCTTCC GCGTCTGCGT CGTCTCCGCC GTCGCCAGCG 
    CGCTCTTCAC CAACGACACC ACCTGCGTCG TCCTCACCGA GTTCATCCTC 
    AAGGTGGCGC GCCAGAACAA CCTCCCGCCG CAGCCGTTCC TCCTCGCGCT 
    CGCGTCGAGC TCCAACATCG GGTCGGCGGC GACGCCCATC GGCAACCCGC 
    AGAACCTCGT CATCGCCGTC GAGAGCGGCA TCACGTTCGG CCAGTTCCTC 
    CTCGGCGTGT TCCCGGCGAT GGTCGTCGGC ATCCTCGCCA ACACCTGCAT 
    CCTCCTCTGC TACTTCTGGA GGTACCTCTC CGCCGACCGC GACCAGCTCG 
    AGGGCGGCGG CGGCGCGCAT GGTCCCGAGG TCGTCGCCGA CGAGGAGGTC 
    ACCTCGCACC GGTTCACCCC GGCGAGGATG TCCCACGCGT CGTCCGTCAA 
    CGACAGCGAC TGCATCAGCG AGCCCATCCG CCGGAGCGAG AGCATGAACC 
    GCGCCGACGC GCTCCGCAGC CGGAGCTACA ACTCCGAGGG CGACATCCAG 
    GTCGCCATCC GCTCGCTCCG GGCGTCGAGC CTGTCGCGCG AGATGGTGGA 
    GGTGTCCACC GTCTGCGACC GCCGCGACGT CGTCGTCGAC GGCGGCGGCG 
    GCGGCGGGCC GCGCAAGATC ACCAGGTCGA CGAGCCACCA GCGGAGCGTC 
    ATCATCGAGG ACGCGCCGGA GCAGCACCAG CATCCGGCCG GCCTTTTCGA 
    CGGCGAGAAG GACAAGGACG ACGAGGCGAT CGGCAAGCGG CGGCGGTGGA 
    AGGTGATCGT GTGGAAGTAC GCCGTCTACC TCACCACCCT CGGCATGCTC 
    GCCGCCCTCC TCCTCGGCCT CAACATGTCG TGGACCGCCA TTACCGCCGC 
    CCTCATCCTC CTCGCCCTCG ACTTCACTGA CGCCCAAGCT TGCCTCGAGA 
    AGGTGTCATA CTCGCTGCTG ATCTTCTTCT GCGGGATGTT CATCACGGTG 
    GATGGATTCA ACAAGACTGG AATTCCAAAC ACTCTCTGGG AGCTCGTCGA 
    GCCGTATGCG AGAATCGATA GCCCGAAAGG CGTCGTTCTT CTCGCGATCG 
    TCATCCTTGT TCTGTCAAAT GTGGCATCAA ATGTTCCAAC AGTTCTACTG 
    CTGGGCACAA GAGTGGCAGC ATCAGCCGCA GCGATCTCCC CTGCATCGGA 
    GAAGAAAGCC TGGCTGATCC TGGCCTGGGT GAGCACGGTG GCCGGCAACC 
    TGACCCTCCT CGGCTCAGCC GCGAACCTGA TCGTCTGCGA GCAGGCGAGG 
    CGCGCGCAGT TCTTCGGGTA CAACCTCACC TTCTGGAGCC ACCTCCGCTT 
    CGGCGTGCCG TCGACGATCA TCGTCACCGC CATCGGCCTT CTCATCGTCA 
    TGAGCTACTG ATGAACAAGC CTCAAATGGA GAAGAAGAAG TAAGTAAGTA 
    GCAGCAATCG AAATCACGTA GCAGCAGTAC AAGATTGAAG GTTTTACTAC 
    TACTACTACT ATTTCAGCTG GTTTCTTCCA CAAAGGTAAA GAAGAATGGA 
    AGGAAGCAGC TGTGGATATG ATGGATGCAG ATGGGGACTG AACTGAAATA 
    CTAGGTTCAG CTGAGAAAAA ACAATGTGAT ACTTTGTAAT GTGTTTTTTG 
    TTGTTATAGC TGGGTTTTGT GTTCTGTACT TGTAATCTTT TAATCCATGC 
    ATGCATGCGC GAAGCAAAAT TAAGCGCGAG GTTGTGTCGC TAATTAATCT 
    GCTGAAAAGC AAAAAAATAA GTGGGGGCAG ATTATTGTTT GTAGATGATG 
    ATAATTAATG ACCCAGTCGA TGGAACTTGG AATTAGTCGG CGTACTTTGT 
    ACCCTGTTGT AAGGTGAAGC AAGGCCTTTG ATAGGAATGG ATATATGGTG 
    ATGTTATTTT GCT

    Gene models with high sequence identity

    1. AT1G02260.1 [+] show detail - Divalent ion symporter
      E-value: 7e-160; Score: 561.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ARSENITE TRANSPORT PROTEIN 1.4e-282
    HMMPanther CATION TRANSPORTER RELATED 1.4e-282
    Coil coiled-coil 0
    HMMPfam Divalent ion symporter 1.9e-104

    See the detailed result >

    AT1G02260.1

    Model type
    Protein coding
    Short Description
    Divalent ion symporter
    Computational Description
    Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR