K05338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05338

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05338

Determination of introduced cDNA(s)

  • J033028G10 - Rice Full-length cDNAs - Original: J033028G10

    full reading [+] show sequence

    Nucleotide sequence: J033028G10 - full reading 
    GTGCCGCCGC CTCCTCCCTT CCTCTCTTCT TTCCTCGCCG ACGACGCGAT 
    TCCCCACCGG CGTACGGCGG CGGCGGCGGC GAGGGATTTC GCCGGCCAGC 
    TAGCCCCATC CTCAACAAAA TCGAGGGGTC GGTTGCTCTC CCGGTGGAAG 
    AGCCCCATGG CCTCCGCCAC CGCCCCGCAG CCTGTGTCCT CTCCATCCGC 
    CGCAGCCGGC GCCGCGTCGA ACAACCCCCA CAAGCGCAAG AAGCCGGCGG 
    CGAGGGGGAA GGGGAAGGGC AAGGGAAAGG GCCGCCTCGC CAAGACGCCC 
    AGGCGCTCCG ATGACCCCGG CGACCTCCCC CGCCGCCGCA GCAAGCCCAG 
    CGACAGGTTC CTCAAGCTGC TCCGCAAGCG CGCCCGCGAC TACAACTCCG 
    ACGACTCCGA CGACGAGGAG CGCCTCTCGG ATGAGGACGA GGAGGAGGAG 
    GGGGCTTCCG GCTCCGGTGA CGACGAGGCC GCCGGCGCGG TGACCAGGTT 
    CGAGCAGGGG TGCCGCGCGT TCCGCGTCGC CTTCACGAAG ATCATGGCCA 
    AGAAGCTCCC CGACGACCCA CTGGGTCCAA TTCTTTCGGC GCACAAGAAG 
    CTGGTCGCCG CCAAGTTGGC CGAGGACGCA GAAGAACACA AGCCCAAGGG 
    AGAAGGCCGC AGGGAAAAGC GCATGGCTGC AGAGAAGGGC CATGTCATTC 
    CCACAAATCA TTTAGATAGT AAAGAGAAGG AGCTCATCAA AATCGCAACC 
    CAAGGGGTCG TCAGGTTGTT CAACTCGGTA AGCAAGGCGC AGAATTGTCG 
    GAAAGGTTTG AACCCATCAA GGAGTAAAGA CGCCAAAGTG TTGGCAAAAG 
    AAACAAAGCA GGCCTTCCTC ACAGAATTAA GCAAAACATC TAACCAAAGT 
    CAAAAGGGCA AGGCATCTTC CAACTTTTCT AAGAACAATA GCAAAGACGA 
    AGACGAACCT GGGTGGGCAC CCCTACGCGA GACATACATG CTTGGGTCGA 
    AATTGAAAGA TTGGGATAAA ATGCAGACCT CTGATGTTGT GAATGAACAA 
    ACGGAGATCC CTTTGGACGA CTCTTCTGAT GAGGAATAGG CAATAGATTC 
    ACCTGAGTGA GTTGAAGCAG CATTTGGGAC AATGTTCCTG TGCTTTGAAG 
    TCGTGTTCTT GTTATTGACA TTGTAAAGCG ATATTTGGTT CAAATTTGCA 
    AGTTAAGTTT TCTTATCATT GTTTCATGCA TTGATGAATG TGATGGCTAA 
    TGCACGGCAC GGGCAAGTTG TCC

    Gene models with high sequence identity

    1. AT5G48240.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 6e-48; Score: 188.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Arabidopsis thaliana genomic DNA, chr 1e-67
    HMMPanther Protein of unknown function DUF1665 1e-67
    HMMPfam Protein of unknown function DUF1665 1.3e-26

    See the detailed result >

    AT5G48240.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR