K05404

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05404

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05404

Determination of introduced cDNA(s)

  • J033133K04 - Rice Full-length cDNAs - Original: J033133K04

    full reading [+] show sequence

    Nucleotide sequence: J033133K04 - full reading 
    GGGATTCCCA CCCCGCGTGC AGCTTAGGCG AACCCTCCTC CCTCCGTTCC 
    ACACGCCCCA GTTCCCCGCT CTCTCCCCCT CACCTCCTCA TCCTCCTCCT 
    CCGCTGCCGC CGCCGCCTCC GCCATGGGCA GGGGGAAGTT CAAGGGCAAG 
    CCCACCGGCC GCCGCAACTT CTCCACCCCC GAGGAGATCG CTGCTGGTAC 
    TTCAGGTGGT CCACGCACAT TTAAGAAGAA TTTAGCTGAG GAGGAAAAGG 
    AGGAGGAAGA AGACGACATA GAAGAATCTG AAGAGGAAGA ATCTGAAGAT 
    GAGTCTGAAG GGAAGGCTAA ACATAAAGGA ACTGAAGGTC TTATTCAGAT 
    TGAAAACCCG AACTTAGTGA AAGCAAAGAA TATAAAAGCC AAGGAAGTTG 
    ATCTCGGAAA GACAACTGAG CTCTCGAGGC GTGAAAGAGA GGAGATCGAG 
    AAACAGAAAG CTCATGAGCG CTATATGAAG CTTCAGGAGC AAGGAAAAAC 
    AGAACAAGCT AGGAAAGATT TGGAACGTCT TGCTTTAATA AGACAACAAA 
    GAGCTGATGC TGCAAAGAAA CGTGAAGAGG AGAAAGCTGC CAAAGAACAG 
    AGGAAGGCTG AAGCACGCAA ATAACTGCGG CAACCATGTG GACAATGAAG 
    GCGTGAGCTG CGTCGGCTGG ATATTTATTT CTTATATATA TGCCCCTAGT 
    ATCTTTTAAA CTCGGTCTCG ATTTCGATAT TTCCATAAAA TTATGCATTG 
    ACTAACTGTA GTATTGTCGA CGTGGCTTGA TGTAAACTTG AGCTTGGCAG 
    GGTGCATATG TAGTATGATC AGTTTATGCA AAATTTGCGT TTACTTACGT 
    TGATATATAA ATCAAGAACG TTGTG

    Gene models with high sequence identity

    1. AT5G46020.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Ha...
      E-value: 1e-37; Score: 153.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN ( 7.7e-31
    HMMPfam Casein kinase substrate, phosphoprotein PP28 1.7e-30
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G46020.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR