K05413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05413

Determination of introduced cDNA(s)

  • J013135I03 - Rice Full-length cDNAs - Original: J013135I03

    full reading [+] show sequence

    Nucleotide sequence: J013135I03 - full reading 
    GACTGCGAGT GACCGGAGGC AGCGTCTCCT CCTCCTCCTC CTGCGGCTGC 
    GTCTACGAGC GCGTCCATGG CGTCCCTCTC CCCTTCCCTC CACCTCCCTT 
    GCAATTCAAG GACTGGCTTT GCTGGAAAGA CACAAGGGAT TCGTCTTCGT 
    GTTATCCCTG CTGGCAGAGT TGGTTTTGTC AGAACAACAG TGGAGTGCAA 
    AGAATCTAGA ATAGGAAAGA AGCCGATCGA AGTGCCATCA AATGTGACCC 
    TCACGTTAGA GGAGCAGTTT ATTAAGGCTA AGGGTCCATT AGGAGAATTA 
    TCACTAAACT ATCCAGGTGA AGTAAAAGTG GTGAAAGAAG AATCTGGTAA 
    GCTGAGAGTT TCCAAGACTG TGGAGACCAA AAGGGCAAAC CAGATGCATG 
    GCCTTTTCAG GACCCTGACT GACAACATCA TCGTAGGTGT GTCAAAGGGG 
    TTTGATAAGA AGCTTCAGCT AGTTGGGGTT GGATACCGTG CAGCGGTGGA 
    GGGTAAAGAT CTTGTGATGA ACCTGGGATT TTCGCACCCG GTTCGGATGG 
    CTGTTCCAGG AGGCCTGAAA GTTAAGGTGG AAGAGAACAC CAGGATCATT 
    GTGAGTGGCT ACGACAAGAG CGAGATCGGT CAATTCGCTG CTTCCATAAA 
    GAAGTGGAGG CCGCCTGAAC CATACAAGGG GAAGGGCATC CGGTATGCCG 
    ATGAGATCGT CAGAAGAAAG GAGGGCAAGG CTGGGAAGAA GAAATAGAAA 
    CCGAGTCTTT GTTGTACTTT GGGTTTCATA CTTCATTCAA TTTTTTTTCC 
    GATGTAATCC CTCTCTTATT TTGTGAAGAA GAAACCAAAC CAGTAAGAAA 
    GAACATGTTC TTTGGATCTT CCGTGACTTG TAGAGATGCG ATGAAACATG 
    AAACTGTTTT CATCAACACA TGGTCTGCTT AGCGTGATTG CGATGCTACC 
    AAGAACTCCC AGCAACATAT ATACATGATG ATACAATTGA TAAGC

    Gene models with high sequence identity

    1. AT1G05190.1 [+] show detail - Ribosomal protein L6 family
      E-value: 3e-82; Score: 302.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ribosomal protein L6, bacterial-type 1.5e-32
    FPrintScan Ribosomal protein L6, bacterial-type 1.5e-32
    FPrintScan Ribosomal protein L6, bacterial-type 1.5e-32
    Gene3D Ribosomal protein L6, alpha-beta domain 5.4e-20
    Gene3D Ribosomal protein L6, alpha-beta domain 5.1e-36
    superfamily Ribosomal protein L6, alpha-beta domain 1.5e-32
    superfamily Ribosomal protein L6, alpha-beta domain 1e-18
    HMMPanther 50S RIBOSOMAL PROTEIN L6 3e-84
    HMMPanther Ribosomal protein L6 3e-84
    HMMPfam Ribosomal protein L6, alpha-beta domain 2e-13
    HMMPfam Ribosomal protein L6, alpha-beta domain 5.7e-20
    HMMTigr Ribosomal protein L6, bacterial-type 2.2e-97
    PatternScan Ribosomal protein L6, conserved site 0

    See the detailed result >

    AT1G05190.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Computational Description
    embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR