K05418

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05418

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05418

Determination of introduced cDNA(s)

  • J033126D12 - Rice Full-length cDNAs - Original: J033126D12

    full reading [+] show sequence

    Nucleotide sequence: J033126D12 - full reading
    GAGCGACGAT TAACAAAAAC CACAACCATT ATTAATCCTC CTCCTCATCC 
    ATCCTCTTCA ATTCCTCTCC GTATTAATCG AAACCACAAG AGCGAGCTAG
    CTAGCGATAT ATCCCCCTCT CTCTCTCGTC TCAAGAAGAT CGATCTCCAA
    AATCGAACAA AAGCAGTATT CGATCAGGTG TTCGTCGTCA GAAGAAGAAG
    AAGCGAGCGG ATAGGTGATC GCCTGTGAGG AGATGTCGTC GGCGACGGAC
    GGCGCGGCGT CGAGGCTCGG CGTCGCCGGG GCTCTGGGGA TGTCGGTCAC
    GTCGTCGGTG GCTATTGTCA TCTGCAATAA GTACCTTATC AGCACCCTGG
    GCTTCTTCTT CGCGACGACG CTGACGAGCT GGCACCTGAT GGTGACCTTC
    TGCACGCTGT ACGTCGCGCA GCGGCTGCGG TTCTTCGAGG CGAAGCCGAT
    CGATGCGCAG ACCGTCATCT CCTTCGGGCT GCTCAATGGT ATCTCCATTG
    GCCTCCTCAA CCTTTGCCTT GGATTCAACT CAGTTGGCTT CTACCAGATG
    ACCAAGCTGG CTATCATACC ATTCACCATG CTCTTGGAAA CCATCTTTCT
    TAGCAAGAAG TTCAGCCGGA GCATCAAGAT CTCCCTCATG GTCTTGCTCC
    TTGGAGTCGG TATCGCGTCG GTGACCGATC TCCAGCTCAA TCTCCTCGGC
    TCGATCATCG CAGTGCTCAC CATCGCCGCG ACGTGCGTCA GCCAGATTCT
    GACGAACCAA ATCCAGAGGA GGCTGAAGGT GTCGTCGACG CAGCTGCTGT
    ACCAGTCGTC GCCGTACCAG TCCGCCGTGC TGCTCGTCAC CGGCCCGTTC
    GTCGACAAGC TCCTCACCAA CCGCGACGTC TTCGCCTTCA CCTACACCTT
    CCAAGTCGTG GCGTTCATCG TGCTGTCCTG CTCGATCGCG GTGTGCGTGA
    ACTTCAGCAC GTTCCTGGTG ATCGGGACGA CGTCGCCGGT GACGTACCAG
    GTGCTGGGGC ACCTCAAGAC GTGCCTCATC CTCTCCTTCG GCTACGTCCT
    CCTCAGGGAC CCCTTCACCT TCCGCAACGT CGCCGGCATC CTCGTCGCCA
    TCTTCGGGAT GGGCCTCTAC TCCTTCTTCT CCGTCTCCGA GTCCCGCGAC
    AAGAAGCTCG CCGACGGCCC CTCCCCTCCT CTCCCCATCT CTTCCTCCCA
    GATGGCGGAG ATGAAGGACT CGGAGCCGCT GCTGGGCGGC GGCGGCGGCG
    CGGCGGCGAA GAGCTCGCCG TGGAACGAGG TGAAGGGGTT GCAGAGCTTC
    GACGAGGTGC CGAGGACGGC GAAGAGCGCG TTCAGCCGGC CGTGACGACG
    ACGACGACGA GGGCGGACGC GTGCGCGCGT GACAGCTAGG ACTGTAGCTA
    GTGCAATTTG GGCTGCGACA GCACAAGGAG AATTTGGGGG GAAAGAACAT
    ATCATATGCG TCTCATCTCA CCGCAGTTCT TTCTGTTCTT TTTTTGTTGT
    AGATGATGAC GTAATGTGTT GGTTTGTTGA AATTTTTAAT GGTTCTTGGG
    AAGCATCGAG AGGTTCTGAC AGATATGCTA ACTCCGTTCA CAAATATAAG
    CACTTCTAGA AAGGGTTAAG GTTATTACC

    Gene models with high sequence identity

    1. AT1G06890.3 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 1e-110; Score: 397.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 9.5e-31
    superfamily Multidrug resistance efflux transporter EmrE 0.000086
    superfamily Multidrug resistance efflux transporter EmrE 0.00044
    HMMPanther SOLUTE CARRIER FAMILY 35 8.2e-88

    See the detailed result >

    AT1G06890.3

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2).
    Link
    InterPro Scan - TAIR