K05434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05434

Determination of introduced cDNA(s)

  • J033129M07 - Rice Full-length cDNAs - Original: J033129M07

    full reading [+] show sequence

    Nucleotide sequence: J033129M07 - full reading 
    GATCTCTTCC CAAGCTTCAA CTTCAAGAAC CCACCCACTT CTCCTCCTCT 
    TCTCCATCCG CTGCGGCAAG CGCGCAATTC AGTTGCTGCG AGCTCGCTCG 
    CCGGCGACAA TGGCGGCGGC GGTGGCGGTG GTGGTTGGTT GCGTTCTTCT 
    TGGTGGTGTG TGGGGGTTCC CGGAGGAGGA TTTGGTGGCG CGGCTGCCGG 
    GGCAGCCCGT CGTCGGGTTC AGGCAGTTCG CCGGATACGT CGACGTCGAC 
    GAGAAGGCCG GGAGGAGCCT CTTCTACTAC TTCGCCGAGG CGGCGGAGGG 
    CGCCGCCGCC AAGCCGCTCA CCCTCTGGCT CAACGGAGGT CCTGGATGTT 
    CTTCGGTTGG AGGTGGCGCG TTCACAGAGC TCGGCCCATT TTATCCGAGA 
    GGAGATGGCA GAGGCCTGAG ATTGAACAAG AAGTCTTGGA ACAAAGTATC 
    CAATCTTCTG TTTGTTGAAT CACCGGCTGG AGTTGGATGG TCCTACTCCA 
    ACACTTCATC AGATTACAAT ACTGGCGATG CACAGACCGC TAATGACATG 
    TACAAATTTC TGTTGGGATG GTACAAGAAG TTCCCTGAAT ACAGGTCAAG 
    AGGGCTACTT CTTAGTGGAG AGAGCTATGC AGGGCATTAT ATACCGCAAC 
    TCACCGATGT ACTTCTCACA CATAATGAGA AATCAAATGG GTTCAAATTC 
    AACATCAAGG GAGTAGCTAT CGGGAATCCG CTTCTCAAGC TTGACAGAGA 
    TGTCCCCGCA ACATATGAGT ATTTCTGGTC CCATGGCATG ATCTCTGACG 
    AAATATTTCT ATCAATCAGC CACAGTTGTG ATTTTGAGGA CTATACCTTT 
    AGCAACCCCC ACAATGAGAG CAAGTCATGC AATGATGCCA TTGCAGAGGC 
    AAACAGTATA GTTGGGGATT ATGTGAACAA TTACGATGTT ATTCTTGATG 
    TGTGCTACCC ATCAATTGTG ATGCAGGAGC TACGGCTGCG GAAATATGTG 
    ACTAAAATGA GTGTAGGTGT GGATGTTTGT ATGACTTACG AAAGGTATTT 
    CTATTTCAAC CTTCCAGAAG TGCAGCAAGC TCTTCATGCT AACAGAACAC 
    ATTTGCCCTA TGGCTGGAGC ATGTGCAGCG ATGTGCTGAA CTACAGCAAT 
    AAGGATGGCA ACATCAACAT CTTGCCATTA CTTCAGAGAA TTGTAGAGCA 
    CAAAATACCA GTTTGGGTGT TCAGTGGAGA TCAAGACTCT GTGGTGCCCC 
    TATTGGGCTC CCGAACTCTT GTACGAGAGC TAGCTCATGA CATGGGCTTG 
    CATGTCACAG TCCCATACAG CAGCTGGTTC CGCAGAGGGC AGGTTGGAGG 
    CTGGGTAACA GAGTATGGTA ATATTCTGAC CTTTGCGACG GTGCGAGGAG 
    CATCTCACAT GGTGCCATTT GCGCAGCCAG ACCGAGCTCT CGGACTTTTT 
    CAATCATTCG CACTTGGACG GAGACTCCAG AATACAACCC ACCCACCTAT 
    TAACTAAGTG TACCTACGAA AGGAGCTGAA GATACAAACA AATAGTCTAG 
    GATTTTCAGT TTTGCTACAG AAGATTAGTT CATAAGGGTG TATTAGATGG 
    TCAAATACGA ATATTTTATC TATTAGAGAG AACAGGGAAA TAATACTAGA 
    TTAAATTCTT TATTGTTCTC TATCTGGATT GTCAGATTGC ATTCCTGGAA 
    GTCTGGAACA TTGAGCAATC TGTATAACTA TGTCATTTTA GGGGTTTTGG 
    GGGC

    Gene models with high sequence identity

    1. AT5G42240.1 [+] show detail - serine carboxypeptidase-like 42
      E-value: 0; Score: 679.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 2.4e-126
    FPrintScan Peptidase S10, serine carboxypeptidase 4.9e-24
    FPrintScan Peptidase S10, serine carboxypeptidase 4.9e-24
    FPrintScan Peptidase S10, serine carboxypeptidase 4.9e-24
    FPrintScan Peptidase S10, serine carboxypeptidase 4.9e-24
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    HMMPanther SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE 6.1e-243
    HMMPanther Peptidase S10, serine carboxypeptidase 6.1e-243
    Gene3D no description 4e-125
    HMMPfam Peptidase S10, serine carboxypeptidase 4.2e-127

    See the detailed result >

    AT5G42240.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 42
    Computational Description
    serine carboxypeptidase-like 42 (scpl42); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 41 (TAIR:AT5G42230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR