K05450

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05450

Determination of introduced cDNA(s)

  • J023056E18 - Rice Full-length cDNAs - Original: J023056E18

    full reading [+] show sequence

    Nucleotide sequence: J023056E18 - full reading
    GGAGATCAGC GAGCAACACA ACCGCCACAC CCAGCTAAGC GCCGGTCGAC 
    CGATCGATCG ATCGATATGG GCTCGCTGAG AGGAGGCGGC GGCGGCGGCG
    GAGGAGGAAG AGGAGATTGC AGTAAGCAGG AGGAGACGGA GAGGGTGATG
    AGGAGCGTGG ACGCGGAGGA GGCGTGCGCG CTGCTGAGCT CGGGGAGGCA
    CCAATACCTG GACGTGAGGA TGTGGGAGGA CTTTGACAAG GGCCACGTCG
    CCGGCGCCCG CAACGTGCCC TACTACCTCT CCGTGACGCC GCGCGCCAAG
    GAGAAGAACC CGCACTTCGT CCAGCAGGTG GCCGCCCTCT ACCACGCCCA
    CGACCACATC ATCGTCGGTT GCCGCTCCGG CGTCCGGTCC AAGCTCGCCA
    CGGCAGACCT TGTCGCCGCG GGATTCAAGA ACGTGAGGAT CCTTGAAGGC
    GGCTACCTCT CCTTGCTCCG CGCTGCTAAT CAACAATAAC CGCACCCGAG
    CCTGATTTTT TACCTACAGA TCATGCCCAC TAATTATATA ATACTACGGA
    GGAGTACTAC TTTTTCTTCG GGGGTGATTA TATACTAATA CTATACTTGT
    CGCTCGCTAC AGATTATTGA GATGTGGCAG CTTGATTATT GCTCAAGACA
    AGACGACGAT CGAAGCAGAA CATAGTTCAA GATGTTTCCG ATCGATCCAT
    CCATCGGTTG AATGTATATG CGACTATATA TGTTCGGTCG GTCAAAATAT
    GTAAATAAGT CGACCTTAAT TGCTTGAGAG AATTGATGGA GCACTATACC
    GACTGTTAAA ATTTTCAATG AAAAGCTAGG TAAAATAACT AGCTTGAGAT
    AGAGGTGTTT TGGGGATACA AAGGTGAAAT GGAAGCGGAG ATCGGGAATC
    TCCTTCCCAA ATTCCATTTC TCCAATCCCA ATTCCCTAAC TTCTTCTTCC
    CGATCTCTGC TTCAATTTCA CCCAATTTGT ATCCATAAAA CACTTTTATT
    CTCAGGTTTT TTATTACCTC ATTGTCCGCT

    Gene models with high sequence identity

    1. AT5G66170.3 [+] show detail - sulfurtransferase 18
      E-value: 9e-22; Score: 101.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rhodanese-like 2.3e-18
    HMMPanther FAMILY NOT NAMED 0.00014
    superfamily Rhodanese-like 2.9e-24
    Gene3D Rhodanese-like 3.2e-23
    ProfileScan Rhodanese-like 16.601
    HMMSmart Rhodanese-like 1.4e-19

    See the detailed result >

    AT5G66170.3

    Model type
    Protein coding
    Short Description
    sulfurtransferase 18
    Curator Summary
    Encodes a thiosulfate sulfurtransferase/rhodanese.
    Computational Description
    sulfurtransferase 18 (STR18); FUNCTIONS IN: thiosulfate sulfurtransferase activity; INVOLVED IN: aging; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1).
    Link
    InterPro Scan - TAIR