K05450

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05450

Determination of introduced cDNA(s)

  • J023056E18 - Rice Full-length cDNAs - Original: J023056E18

    full reading [+] show sequence

    Nucleotide sequence: J023056E18 - full reading 
    GGAGATCAGC GAGCAACACA ACCGCCACAC CCAGCTAAGC GCCGGTCGAC 
    CGATCGATCG ATCGATATGG GCTCGCTGAG AGGAGGCGGC GGCGGCGGCG 
    GAGGAGGAAG AGGAGATTGC AGTAAGCAGG AGGAGACGGA GAGGGTGATG 
    AGGAGCGTGG ACGCGGAGGA GGCGTGCGCG CTGCTGAGCT CGGGGAGGCA 
    CCAATACCTG GACGTGAGGA TGTGGGAGGA CTTTGACAAG GGCCACGTCG 
    CCGGCGCCCG CAACGTGCCC TACTACCTCT CCGTGACGCC GCGCGCCAAG 
    GAGAAGAACC CGCACTTCGT CCAGCAGGTG GCCGCCCTCT ACCACGCCCA 
    CGACCACATC ATCGTCGGTT GCCGCTCCGG CGTCCGGTCC AAGCTCGCCA 
    CGGCAGACCT TGTCGCCGCG GGATTCAAGA ACGTGAGGAT CCTTGAAGGC 
    GGCTACCTCT CCTTGCTCCG CGCTGCTAAT CAACAATAAC CGCACCCGAG 
    CCTGATTTTT TACCTACAGA TCATGCCCAC TAATTATATA ATACTACGGA 
    GGAGTACTAC TTTTTCTTCG GGGGTGATTA TATACTAATA CTATACTTGT 
    CGCTCGCTAC AGATTATTGA GATGTGGCAG CTTGATTATT GCTCAAGACA 
    AGACGACGAT CGAAGCAGAA CATAGTTCAA GATGTTTCCG ATCGATCCAT 
    CCATCGGTTG AATGTATATG CGACTATATA TGTTCGGTCG GTCAAAATAT 
    GTAAATAAGT CGACCTTAAT TGCTTGAGAG AATTGATGGA GCACTATACC 
    GACTGTTAAA ATTTTCAATG AAAAGCTAGG TAAAATAACT AGCTTGAGAT 
    AGAGGTGTTT TGGGGATACA AAGGTGAAAT GGAAGCGGAG ATCGGGAATC 
    TCCTTCCCAA ATTCCATTTC TCCAATCCCA ATTCCCTAAC TTCTTCTTCC 
    CGATCTCTGC TTCAATTTCA CCCAATTTGT ATCCATAAAA CACTTTTATT 
    CTCAGGTTTT TTATTACCTC ATTGTCCGCT

    Gene models with high sequence identity

    1. AT5G66170.3 [+] show detail - sulfurtransferase 18
      E-value: 9e-22; Score: 101.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rhodanese-like 2.3e-18
    HMMPanther FAMILY NOT NAMED 0.00014
    superfamily Rhodanese-like 2.9e-24
    Gene3D Rhodanese-like 3.2e-23
    ProfileScan Rhodanese-like 16.601
    HMMSmart Rhodanese-like 1.4e-19

    See the detailed result >

    AT5G66170.3

    Model type
    Protein coding
    Short Description
    sulfurtransferase 18
    Curator Summary
    Encodes a thiosulfate sulfurtransferase/rhodanese.
    Computational Description
    sulfurtransferase 18 (STR18); FUNCTIONS IN: thiosulfate sulfurtransferase activity; INVOLVED IN: aging; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1).
    Link
    InterPro Scan - TAIR