K05507

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05507

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K05507

Determination of introduced cDNA(s)

  • J013120O07 - Rice Full-length cDNAs - Original: J013120O07

    full reading [+] show sequence

    Nucleotide sequence: J013120O07 - full reading 
    GGGCCGTCGC AAGGCCGCCG CATACTCTTC TCCCCTCTTT GACTCGTTTT 
    GCGCCCAAGT CGATCCCCAA CGTCTCCTCC TCGCTGGTTC GCCCGCCGCG 
    CCGCGCCGAT CTCCATCCGT TCCACGAGCA GCGGTGACCG GGTGCTGTCG 
    TCCTGCTCCC CGCTTCCCTT CCGGCTCCGA TTTGAGGCGC TAAAGTTTCC 
    ATTCCGTGTT ACGAAAAGCT GCATTAGGAC ATGGACATGG CATTGCCAAT 
    AGTGAATGCC ACCGCAGCGG TGCTTGCTCG TGTCTCAGCT GCATTCAATG 
    CCCCTTTTGC CCGCGCAGTT GTCTTTGGGG TTCATATCGA TGGGCACCTG 
    GTTGTTGAAG GGCTCCTTAT AGCGGTCATA GTGTTTCAGC TTTCTAGGAA 
    GAGCTACAAA CCGCCCAAGA AGCCACTCAG TGAAAAGGAG ATTGACGAGC 
    TATGTGATGA ATGGGAGCCA GAACCTCTGT GTCCTCCGAT CAAGGATGGG 
    GCCCGAATTG ACACACCAAT GTTGGAAAGT GCTGCTGCTC CACATACAAC 
    CATTGATGGG AAAGAAGTTA TAAACTTTGC ATCAGCAAAT TATCTTGGTT 
    TGATTGGCAA TGAGAAGATT ATTGATTCTT GTGTTGGTTC ACTGGAGAAA 
    TATGGTGTTG GTTCTTGTGG TCCACGTGGC TTTTATGGAA CAATTGATGT 
    CCACCTTGAC TGTGAGGCAA AAATAGCGAA GTTTCTTGGA ACTCCAGACT 
    CAATTCTGTA TTCATATGGG ATTTCTACAA TATTTAGTGT GATACCTGCC 
    TTTTGTAAGA AAGGAGACAT CATAGTTGCT GATGAAGGTG TGCACTGGGC 
    AGTGCAAAAT GGTCTTCATC TGTCAAGAAG CACTGTTGTT TATTTTAAAC 
    ACAATGATAT GGCTTCACTT GCAAACACTT TGGAAAAACT TACACGTGGA 
    AATAAACGAG CAGAAAAGAT CAGACGATAC ATTGTTGTAG AATCTATCTA 
    CCAGAATTCT GGTCAAATTG CTCCCTTGGA TGAGATTGTC AGATTGAAGG 
    AGAAATATCG ATTCCGTGTT ATTCTGGAGG AAAGCCATTC TTTTGGTGTG 
    CTTGGCCAGT CTGGACGAGG CCTTGCTGAA CATTATGGAG TTCCAATTGA 
    CAAAATTGAT ATTATCACTG CTGGAATGGG GAATGCATTA GCTACTGATG 
    GTGGCTTTTG TACAGGAAGT GTTAGAGTTG TTGATCATCA GCGTCTAAGC 
    AGTTCTGGCT ATGTTTTCTC GGCTTCTCTG CCACCTTATC TTGCCAGCGC 
    TGCGGTTTCT GCTGTCAGCT ACCTGGAGGG GAACCCGTCA GTTCTTGCAG 
    ACCTGAGGAG CAACATTTCT TTCCTGCATA AAGAACTGTC AGGTACTCCA 
    GGACTTGAAA TTTCCAGCCA TGTTCTGTCA CCTATCGTTT TCCTCAAACT 
    GAAGAAATCG ACGGGTTCAT CAAACACCGA TATAGATCTT CTTGAAACTA 
    TTGCTGAGAG GGTATTGAAG GAAGATTCAG TTTTTATCGT GGCGTCAAAG 
    CGGTCACCTT TGGATAGGTG CAAACTTCCC GTCGGAATAC GCCTCTTCAT 
    GTCAGCCGGC CACACCGATT CAGACATCTC CAAAGTGTCC TCATCCTTGA 
    AGCGGGTCTC AGCATCAGTT CTGTCAGATT ACATCTGATC CCCTTTCTCT 
    ACGAGCTGTG CACTAATCTC TGTGTGCATG TTTGGTTAAT GTACATAACC 
    TGTACATTTG TAGGTTCCGA TGATTCCCGT TGCCGCTCAT ACTTGCAAAC 
    ACTTCGAAAA ATAGACGTAG AACAGTGAAA TTAGGTGTGT TATGTATCGT 
    TCGGTCTTCT GGTAGTGGTT TCCCGGTAGA ATTCATTCTA TATCTTTAAT 
    TTTGTCCTCT ATTCATCACT TTTATCATTT TGGCTTCAAT TCATCACTTT 
    CTGGTGGATT TATATTCTTT TTTTTAGTGT AGATTGGTTG CGCAAATGGC 
    GAAAAGACCC CAAATTCTCA AATCGGCACA AATCGTTTCC AGGTTTCATC 
    TTACCCAATC GCTCCTTCCT TGCAAATCCA ACCTGAGCAG CCATATTAAC 
    CAAACTGAAA GCGCTGCCTA TCGAACACCA CAGGCGGAGA CGATGGATTT 
    GTGCCGGACA ACCGGAGCAC GTGCAACGCG TCCATGTTCA GCACAAAAAA 
    ATATAACTAC TTCAAGCTAT TAGGACAATG TTATATCCAA ATACATAGAA 
    AAAATATTGC TATATTTTGG AATGGAGATA GTACTTCCAT TCAAATCATG 
    ATATATATAA ATATTAAATT TGAAAATGC

    Gene models with high sequence identity

    1. AT4G36480.2 [+] show detail - long-chain base1
      E-value: 6e-180; Score: 628.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE PALMITOYLTRANSFERASE I 1.4e-226
    HMMPanther CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANO 1.4e-226
    HMMPfam Aminotransferase, class I/II 3e-40
    Coil coiled-coil 0
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.7e-70
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3e-71

    See the detailed result >

    AT4G36480.2

    Model type
    Protein coding
    Short Description
    long-chain base1
    Curator Summary
    Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.
    Computational Description
    long-chain base1 (LCB1); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: cell growth, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: long chain base2 (TAIR:AT5G23670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023054L06 - Rice Full-length cDNAs - Original: J023054L06

    full reading [+] show sequence

    Nucleotide sequence: J023054L06 - full reading 
    GGCGGTTGTT CCCCAGCTAT ACCGCCTCTG ACTCTGAGGA AGGGGCGCAG 
    CACCACCGCC CGATGGGGAA GCCCAAGCCC GCCTCCGCCA CAGCCGCTCC 
    TCGAGGGCAC AAGAGGCGCC CGAAGAGGAC AAGGCCCTCG GGGAAGGGAG 
    GAGGACCCGA GCCGCGCGAG GAGAAGCGCA AGAGGCGAGA GCTCGATGGT 
    GTCGGCCTGG CGGAGGAGTC GCCGCCGCCG GGTTCCAGCC TAGGCAAAAT 
    CTTAAGTACC GAATCTGGAG CAATAGGCCT AGAGCAGAGT GATGAAGATG 
    ACATGGAAGA TGAACACACT GTTCCTGGTG ACGATGAGAC AAATGATATG 
    ATAAACAATA AAGATGATGC TTTTGATGAA ATGGAGGCTT CATGTTCATT 
    TCATCGCCAT GTTAGTCGCA TCATAACGAA TGAAGAAGTC AATGCATTAC 
    TAAAGCAGAA GTGTAAATTT AAATGGGAGG TGCCTGCAGA GGACATTCCA 
    AAATCCAAAT GGGTTGGAAC AGGTGAAAAA ATGGAGGGAG CTTATGTTGA 
    TCTTATTGGT GGTGTCAAAG GAAAGTTGAG GGATCATTGG CAGAATACCC 
    TCTCTGATCA GTTGAATTCT AGATTGAATT TCTTCTCACT TTGTAGTAGC 
    TATCGTGACA TAATGCATTG TAATAAGAAG CCATTTTATC TAAAAGGAGG 
    TAGCACTGTG GATTCCAGTA CAATGGACTC CTATCTTATG CATGCTTTGA 
    ATCATATTAA CAGAACGAGA GAGATTGTTG TAAAAAATGA TGGGAAGCTT 
    AGGAGTGACC CTAGCAAAGA TATTTTGGAT GATAACTCAT TCCTCGATCA 
    GGGCTTTACA CGTCCAAAGG TTCTTTTCCT GTTACCTCTA AAAAGCATTG 
    CGAGGCGTGT TGTGAAGAGG TTGATCCAAC TGTCCCCACT GTCACAAAAG 
    GATATCATTG CAAAATTCGA AGGGAAGTTT GGCGAATCAG ATGATGAAGT 
    AGAGGAGCCT GTTCAAAGTA ATAAACCTGC AGACTTTGAC CTACTGTTTG 
    CTGGAGATAC TGATGATGAG TTCCTTTTTG GGATAAAATA TACAAAAAAA 
    TCTATGAATC TGTTCAGCAA CTTCTACTCA TCTGATATCA TTGTTGCATC 
    TCCTTTGGCA CTTATAAAGA AAATCAATGG AGTTGATGAC AACGGAAAGG 
    AACCTGCCAA GGAAAGGGAT TTTGATTTCC TATCATCAAT TGAAATAGTG 
    GTGGTTGATC ACGCAGATGT GATTCTTATG CAGAGTTGGT CACATCTGTA 
    TGCTGTGTTT GAACAATTAA ATCAGTTGCC ATCAAAGGAA CATGGAACCA 
    ATGTGATGCG TATTAGGCCA TGGTACTTGG ATCAGCATGC ACGTTACTAT 
    CGGCAAACAA TACTCTTGAG CTCTTATCTT ACTCCAGAGA TGAATGCTTT 
    ATTCAATGGA TTATGCTTGA ATTATGAGGG GAAGGTTAAG CTGGTGACTG 
    AATTTAAAGG TGTTCTTTCT AAAATACAGT TTGAAGCACC GCAGGTGTAT 
    GAAAGGTTTG ATGCATCTTC TATTACTGAA GTTGATGATG CTCGCTTTGA 
    TCATTTCTGC AAGAAGGTGT ACCCAAAGAT TCAGGAGTCA GATGAGGGTC 
    GGGTGTTGCT ATTCGTCAGT TCATACTTTG AATATATTAG GATAAGAAAC 
    TTCTTAAAAT CTCAGGAAGC ATCGTTTTGT AGAATTGGGG AGACAACATC 
    GCAACAAGAT ATATCACGTG CAAGACTCTG GTTTTTTGAG GGCAAGAAAA 
    AAATCTTACT TTATAGTGAG AGATCTCATT TCTACCACAG ATACAAGATC 
    AGGGGAGCAC ACCATTTGAT TATCTACTCT TTGCCAGGGA GAAAGGAATT 
    TTACCCAGAG CTTGTAAACA TGCTCAGTGA ATCAGAAAAC AGGAAATGCA 
    CCGTCTTTTT TTCACGTCTG GATCTTCTGA AGTTAGAACG AATTGTTGGG 
    ACGTTTGCTG CACAAAGGTT GGTTTCTTCA GATAAGAGCA TTTTCGTGTT 
    CCGCTGATTC GGGCGTCATG TTCGGCAGCC TCTCAAATTT TGGAATGCGA 
    GATGATTATG TACTGTACCA CAACTCCTTA TTTATTTGTA ATCTAGATTG 
    TGGATGCCAT TTTTTGGTAA AGCTCGTGCT GAATGTTTCG CATCAGTATC 
    TATTTCAATA TTATGGATGC CATTCTTTGT TAGTTTTTGG AAAACATGCA 
    TAGAAACAGT GCCGTCCCTG TGGGAGTGCC ACAAGCATGA CCGCACAGGG 
    CCACCAATCT CAAGGGGCCT CAAATAACTT AGTATGTGTC ACAGGATATT 
    AGCCCAATAG ATTAAATTAG ATG

    Gene models with high sequence identity

    1. AT1G17690.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nu...
      E-value: 2e-175; Score: 613.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Protein of unknown function DUF1253 2.7e-109
    HMMPfam Protein of unknown function DUF1253 5.9e-152

    See the detailed result >

    AT1G17690.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013121I24 - Rice Full-length cDNAs - Original: J013121I24

    full reading [+] show sequence

    Nucleotide sequence: J013121I24 - full reading 
    GCGATGGTTG GCTTCTTCTC GGTTTGTTCG TTCCTTGTGG TCGAGAGTGA 
    GTGAGGTGGA GGAGAGAGAG GAGGAGGAGG AGGAGGGGAT TCATTCACGT 
    GGCTTCCGGA GAGAGCAGGA GTCAACGTGC GGCTTGACTC TGGAGATCTC 
    TCTCTGTCGT CTCGCCTCGC CCAAATCAGA AGCGAATGAT GGAGGCGTCG 
    AGGTCGTGAG AGGGAGAGGA ATCGACGGAG AGAGGGAGGC GGCGGCGGCG 
    GCAGGAAGGT TGGAGAAGGA GAGGCAGTGG AGAAGTCAAG AACAAGAACC 
    CAATCACCGA AACGCCTCAT CACTGCAGCA ATGCCATCAT CAACCATGGC 
    CGTCGACACC ACTGCTTCGG AGTACTGGCT CAATTGGAGG TTCATGCTCT 
    GCGCGGTCTG GGTCTACTCC TGCATGGTCC TGGCATGCTT CTTGATCTGG 
    AAGTACGAGG GGCCGAGCTC ACAGGACGGC AATGGCGATG GCGGCGAGGA 
    CAGTGAGGAT GCGCGGCCGC CCCGGGCCGC ATCCGGGGTT GTGTACCTTG 
    AAGATTGCTG GAAACCATGC CTTGAGCAGA TCCACCCTGG CTGGCTGCTG 
    GCGTTCCGCG TCGTGTCTTT CTTCATTTTA GCCTCCCTGC TTGCGGTTGA 
    TGTCGTCGTC GATGGATGGA GTGTCTTCCT ATACTACACT CAGTGGACCT 
    TCTTGCTAGT CACCTTATAT TTTGGGCTTG GTTCGGTGCT TTCAATTTAT 
    GGATGCTATC AGTATTCATA CAAGAATGGC GACAATAGAT CTGGTGCAGA 
    TCATGGCACA TATATCATTG CTCCAGCTGG GGAAAGTGTA TATGATCAGT 
    CAATAAAAAA TCCTTGTTAC AGTAAAATGC ATGGTGGCAA AGAAATTGCA 
    GGATTTTGGG GTTATCTGTT CCAGATCATG TTTCAGACAA ATGCAGGTGC 
    TGTGATGATT ACAGATCTGG TGTTTTGGTT TATCCTGTAC CCTTTCCTTG 
    CCTACAATCA ATATGATATG AATTTTTTGC TGATTGGGAC ACACTCTATA 
    AATGTTGTGT TCATGATTGG TGATACTGCT ATGAATAGCC TGCGTTTCCC 
    GTGGTTTAGA ATCGCATATT TCTTGCTGTG GACTGGCGCT TTTGTTAATG 
    TTCAGTGGCT CATCCATGCT AGCATATCGA TTTGGTGGCC TTACCCATTT 
    CTGGACTTAG CATTTCCTAA AGCTCCTGTA TGGTATTTGG TGGTAGCAGT 
    GATGCATTTC CCTTGCTATG CTTTATTCGC CCTGGTTATG AGGCTAAAAC 
    AATCTCTGCT GGAAAGATGG TTTCCTCAGA GTTACACCTG CGTGTAGCAA 
    ACAAGAACAT ATATAGTGTT ACAATTTCCC TCCTGCTGCA TCCTGCAAAT 
    GCAAATTATA TGGAGCTGCT GCTCACCGTA AATTCCTAGA AACCATATTG 
    TTCAGGGTTA GATGATATTT CGTAAATTTT TTTCAGACAG CAGCTTCTTT 
    GAGTCAGCTG TTGTCTCCTG CTCTTTTCAA TGGAGAAAAC TGTACAGTCC 
    AATATAATAA TATATGGCAT TCTCAACC

    Gene models with high sequence identity

    1. AT5G62960.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); ...
      E-value: 3e-96; Score: 349.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62960.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR