K05632

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05632

Determination of introduced cDNA(s)

J023106G20 - Rice Full-length cDNAs - Original: J023106G20

full reading [+] show sequence

GAGAAGGTTG TCAATGTTCG GCTCTCCGCC GCACAGCCCA AGAATGTGCC 
GACGCATGAT TCAGAGTCAA AGTTTATCAA GTATAAGCCA TCGCAGCAAT 
CGGCAGCCTT CAATTCAGGT GCCAAGGAGA GGATTATTAG GATGTCAGAG 
ATGGCTCAGG ATCCTCTTGA GCCACCGAAA TTCAAGCATA AGCGAGTGCC 
CCGCGCTTCT GGATCACCGC CTGTCCCAGT GATGCACTCG CCACCACGGC 
CAGTGACAGT GAAGGACCAG CAAGATTGGA AGATTCCACC ATGCATTTCA 
AATTGGAAAA ATCCAAAGGG TTACACCATA CCACTCGACA AGAGGTTGGC 
AGCTGATGGA AGGGGGCTGC AGGAGGTTCA AATTAATGGT AACTTTGCAA 
AGCTCTCTGA AGCACTGTAT GTGGCGGAGC AGAAGGCCAG GGAGGCAGTA 
CAGATGCGAT CCAAGGTGCA GAGGGAGCTG CAGCTGAAGG AGAAGGAGAG 
GAAGGAGCAA GAGCTAAGGG CACTTGCACA GAAGGCGCGC ATGGAGAGGA 
CTGGTGCCCC ACCTGCACCT ACAGGGGTTC CTGCTGGTGG TGGTAGAGGT 
GCTGTTGATG ACAGGGAGGA AGATATGGAT TTGGAGCAGC CTCGTGAGCA 
ACGAAGGGAG AGTAGAGAAG AAAGGGAAGC AAGGATTGAG CGTGACAGGA 
TTCGTGAGGA GAGGAGACGT GAGAGGGAGA GAGAGAGGAG GCTGGAGGCC 
AGGGATGCTG CAATGGGCAA GAAGAGTAAG CTCACTAGAG ACAGGGATCG 
TGATGTCAGT GAGAAGATTG CCCTGGGCAT GGCAAGCACT GGCGGTGCTA 
AAGGTGGGGA AGTCATGTAT GACCAGAGGT TGTTCAACCA GGATAAAGGA 
ATGGACTCTG GGTTTGCTAC AGATGATCAG TATAACATCT ACTCCAAGGG 
TCTCTTCACA GCGCAGCCAA CGCTATCCAC ACTTTACAGG CCTAAGAAGG 
ACGGTGATTC TGATGTGTAT GGCGATGCAG ATGAACAACT GGAGAAGGTT 
ATGAAGACAG ATAGGTTCAA ACCAGACAAA GGATTTTCTG GTGCTTCAGA 
GAGGTCTGGA AAGAGAGACA GACCTGTGGA GTTTGATAAA CAGGAGGAGA 
ATGATCCCTT CGGTCTTGAT CAGTTCTTGA CTGAAGTGAA GAAGGGGAAG 
AAAGCTGTTG AGAAGATTGG AAGCGGAGGA GCCATGAGGG CAAGTGGTGG 
ATCCTCAATG AGAGATGATT ACGAGGGTGG AGGATCTGGG AGGTCCCGCA 
TTAACTTTGA AAGAGGTCGT TGAGGTATTA GATCTGCATG TTTTGTTCAG 
AAGTTTCTCC ATGCATTCCA AATGTTATCT GGAGGGTATT CTGTTGAGAA 
TATCAACTTC TTGATGAGAG GACTTGATGT CTGAGTTGTC TTAATGCAAC 
GTCTACTTCC AAGGGGCATC TTAAGGAGTG TACCTGTTTA GATCCTGTGA 
TTATGCTTGT TGTTTATCTA TTTGTGGATG GATCTGTAAG CTTAACTTAT 
CATCATTCCA TATCCCTTAT ATTTTGTGGT GCTTTATGAA GTCTCGATGT 
GTCTGGCTGA CCTTACATTT TCTGGTACTG TACCAAGTCT TTAAGATGTA 
TCTGCCG

Gene models with high sequence identity

AT1G77180.2 [+] show detail - chromatin protein family
E-value: 3e-138; Score: 489.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SKI-interacting protein, SKIP	7.7e-181
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	SKI-interacting protein SKIP, SNW domain	1.3e-65

See the detailed result >

AT1G77180.2

Model type: Protein coding
Short Description: chromatin protein family
Curator Summary: Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description: SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR