K05634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05634

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K05634

Determination of introduced cDNA(s)

  • J023126K23 - Rice Full-length cDNAs - Original: J023126K23

    full reading [+] show sequence

    Nucleotide sequence: J023126K23 - full reading 
    GCCTCTCCCA TCTCACCCCG CCGCCGCCGC CGCCGCAGCC TCCTCAAGGC 
    TGCTCCCATC CTCTCCTTCG AGTTAGCTTC CTCCTTATTC AACCATGGGT 
    AAGGAGAAGA CGCACATCAA CATTGTGGTC ATTGGCCACG TCGACTCCGG 
    CAAGTCGACC ACCACGGGCC ATCTGATCTA CAAGCTTGGA GGTATCGACA 
    AGCGTGTGAT TGAGAGGTTC GAGAAGGAAG CCGCTGAGAT GAACAAGAGG 
    TCCTTCAAGT ACGCGTGGGT GCTTGACAAG CTCAAGGCCG AGCGTGAGAG 
    AGGTATCACC ATCGATATCG CCCTGTGGAA GTTCGAGACC ACCAAGTACT 
    ACTGCACGGT CATCGATGCC CCTGGTCACC GTGACTTCAT CAAGAACATG 
    ATCACGGGTA CCTCCCAGGC TGACTGTGCC GTGCTCATCA TTGACTCCAC 
    CACTGGTGGT TTTGAGGCTG GTATCTCCAA GGATGGCCAG ACCCGTGAGC 
    ACGCTCTTCT TGCTTTCACT CTTGGAGTGA AGCAGATGAT CTGCTGCTGC 
    AACAAGATGG ATGCCACCAC TCCCAAGTAC TCCAAGGCCC GTTACGATGA 
    AATCGTGAAG GAAGTCTCAT CCTACCTGAA GAAGGTCGGC TACAACCCTG 
    ACAAGATTCC CTTCGTTCCC ATCTCTGGGT TTGAGGGTGA CAACATGATT 
    GAGAGGTCCA CCAACCTTGA CTGGTACAAG GGCCCCACCT TGCTTGAGGC 
    TCTTGACCAG ATCAACGAGC CCAAGAGGCC ATCAGACAAG CCCCTGCGTC 
    TTCCCCTTCA GGACGTGTAC AAGATCGGTG GTATTGGCAC CGTGCCTGTG 
    GGTCGTGTTG AGACTGGAGT CCTCAAGCCT GGTATGGTGG TGACCTTTGG 
    TCCCAGCGGC CTGACCACTG AGGTCAAGTC GGTTGAGATG CACCACGAGG 
    CTCTCCAGGA GGCTCTTCCT GGTGACAACG TCGGGTTCAA CGTGAAGAAC 
    GTTGCGGTGA AGGATCTGAA GCGTGGGTAC GTGGCCTCCA ACTCCAAGGA 
    TGACCCTGCC AAGGAGGCTG CCAGCTTCAC CTCCCAGGTG ATCATCATGA 
    ACCACCCTGG CCAGATCGGC AACGGCTACG CCCCAGTGCT GGACTGCCAC 
    ACCTCCCACA TTGCCGTCAA GTTTGCTGAG CTGGTGACCA AGATCGACAG 
    ACGATCTGGT AAGGAGCTGG AGAAGGAGCC CAAGTTCCTC AAGAACGGTG 
    ATGCTGGTAT GGTTAAGATG ATTCCCACCA AGCCCATGGT TGTGGAGACC 
    TTCTCTGAGT ACCCTCCTCT TGGTCGTTTT GCCGTGCGGG ACATGAGGCA 
    AACGGTGGCT GTTGGCGTCA TCAAGAACGT GGAGAAGAAG GACCCAACCG 
    GTGCCAAGGT GACCAAGGCT GCCGCCAAGA AGAAATGAGC CTCGTTCAAG 
    TGGTGCTTTC CATATCTGCA TTTGAGATAT CTAGCTCTTT TAGTACTCGT 
    TAAGTTTTGT CGACGGTCAT TTCAGTTGTT GCATTGACCG TTAATATCTG 
    CTCGCTTTGT GCACTATGTC AGTCATTTAA AACTCTATTT TCTGTTCGGT 
    TTAAACTTGG ATGTTAAGAC TTATTATTGC CCTTCGACTG TTGTGGAATG 
    CGAGTATACA TTGCTAATTC CTTTGTCTTT ATTTTCGCTT GTGCTATTCG 
    CTGTTTCTGC TGCTATTGGA TACTGGATCG TCTTCCTGTT AATGAAAAGT 
    GAACTTTTTG

    Gene models with high sequence identity

    1. AT5G60390.3 [+] show detail - GTP binding Elongation factor Tu family protein
      E-value: 0; Score: 856.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 5.6e-84
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 2.5e-41
    superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 4.6e-33
    HMMPanther ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) 0
    HMMPanther TRANSLATION FACTOR 0
    PatternScan Protein synthesis factor, GTP-binding 0
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    HMMTigr Translation elongation factor EF1A, eukaryotic/archaeal 2.1e-293
    BlastProDom Q46515_DESMO_Q46515; 1e-06
    HMMPfam Protein synthesis factor, GTP-binding 5.8e-56
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 6.8e-33
    HMMPfam Translation elongation factor EFTu/EF1A, domain 2 2.4e-17
    Gene3D no description 2.4e-58
    Gene3D no description 3.6e-31
    Gene3D no description 1.2e-45

    See the detailed result >

    AT5G60390.3

    Model type
    Protein coding
    Short Description
    GTP binding Elongation factor Tu family protein
    Computational Description
    GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, cytoplasm; EXPRESSED IN: cotyledon, male gametophyte, guard cell, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR