K05714

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05714

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05714

Determination of introduced cDNA(s)

  • J023004D09 - Rice Full-length cDNAs - Original: J023004D09

    full reading [+] show sequence

    Nucleotide sequence: J023004D09 - full reading
    GATGGTTACC GTCTCCCTCC CAAAGCCCCG CCTGGTGATT CGCCGTCTCC 
    CTCCGTCGCC GTGCCTTCCC CCGCCACCGT CCTGCTCACC GGCGTTCCGC
    CGGAACGACT TGAAGTCCAC CTCTCGAGCT CGGCGGCCTC CCCCTTAGGG
    CAGAAGCGGA CGAGGCGAAT GGAAGAGGTT AGGGGCAGGG AGAGCAAAGA
    CCACCGCGGC GGCGGCGGCG GCGGCGGAGG TGATGGGGAC GGCGAGCGGA
    CGGGACGGTG GCGCGCCGAG GAGGTCATCG CTGGGAACCG CGCGGTTCTG
    GAGGCTCTCC GGGAGCTCGT GATGTATCCT GTCCTCTACG CACGGGAGGC
    CCGCGTGCTC GGCCTCAATT TTCCCAGAGG ATTGCTGCTC CACGGCCCCT
    CTGGCACTGG AAAGAAAAGC ATGGTCCGAG CTGTTGTTCG AGAATGTAAT
    GCCCACCTCA CAGTGATTGA TTCAATTTCT GTGCATAAAC CCCACGCTGG
    AGAGGGGGAG AAGTTCATGC GAGAGGCTTT TACTGAAGCA TATTCCCAGG
    CATCACAGGG TAGACCAGCC GTGATATTCA TTGATGAACT TGATGACATA
    TGTCCACCGC GTGGCAGTAG GAGAGAGCAA GGGTCCCGCA TTGTTGGTCA
    GCTGTTGACT CTGATGGACG GGAAGTCATC AAAGCTGCTT CCCCACCTAG
    TTGTTGTTGC ATCTGCTACC AGGGTGGATG CTATTGAGTC AGCACTGCGA
    AGGCCTGGGC GTTTTGACTC AGAGATAGAG GTTACTGTTC CTACAGCAGA
    AGAAAGGTTC GAGATTCTTA AGCTTTATAC CAAGAATCTA CATCTTGGTG
    AATGTGTTGA TCTTCAATCT GTTGCTGCAT CCTGCAATGG TTATGTTGGA
    GCTGATTTAC AAGCTTTATG TCGAGAAGCT GCAAGACGTG CTTATGGTAG
    ATTATCAAGC TCATCAGAGA GTGAGAATGT GCTAACGCTA ATCATGGAGG
    ATTGGGAGTC TGCTAAATCT GTGGCCAAAA ATAGTGTGAC AAGAGGGGTA
    ACTAAAGAAA TTCCAGCTGT TTCATGGGAT GATATAGGAG GTTTGAAAGC
    TGTTAAGAAA AAACTTCAGC AAGCTGTTGA ATGGCCCATC AAGCATGCTG
    CTTCATTTGA TAGACTTGGA ATATCACCTA TCCGTGGGGT GCTATTGCAT
    GGTCCACCAG GGTGCTCAAA GACTACCCTT GCAAAGGCTG CTGCTCATGC
    TGCCCAAGCT TCTTTCTTTT CATTAAGTGG TGCTGAGTTA TACTCCAAGT
    ATGTTGGTGA AGGTGAAGCT TTGTTGCGAC GTACATTCCA GATGGCACGT
    CTTGCTTCTC CAAGCATTAT ATTTTTTGAT GAGGCTGATG CAATTGCCCC
    TAAAAGAACT GGTCCCAGCG GGAACTCTAG TGGCAATGCC ACGGTTGGAG
    AAAGACTCTT ATCAACTCTA TTGACGGAAA TGGATGGTTT AGAACTGGCT
    ACGGGAATTA TTGTATTGGC TGCTACTAAT CGCCCAAATG CAATTGATGC
    TGCTCTTCTG CGCCCAGGGC GTTTCGATAT GGTTTTGTAT GTTCCACCAC
    CAGATGCGGA AGGTCGATAT GAAATACTAC GCATCCATAC ACGCAAAATG
    CCATTAGGAG ATGATGTGGA TCTTTGGAAG GTAGCAGAGC GTACCGAGCT
    TTTCACGGGC GCAGATCTTG AAGGCCTGTC CAGGGAGGCG GGAATGGCTG
    CCTTGAGGGA AAGTCTGAGG TCAGAGCGTT TTGTATGTGA CGATATTCAC
    TTCCAGGCCG CGCTAAGATC CTTGCGTCCA TCACTTACAC AATCAGTGGT
    TGATGAGTAC TCAAATGCAG CCATCCATGG TCCATTGACG AGGAGAAAAC
    ACTAAAAGAT GTATTATTCT GGCGCACAAG CATCAGTGTC GCCCATTGTT
    GATTCTGACT AGTTATCAGA ACATTGTATC ATCGGTCTGC TGTATATATT
    GACCAAAGTT GTGACATGTT CCCATATGAT TGCC

    Gene models with high sequence identity

    1. AT2G03670.1 [+] show detail - cell division cycle 48B
      E-value: 7e-179; Score: 624.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    HMMPanther SPERMATOGENESIS ASSOCIATED 5-LIKE 1 2.4e-260
    HMMPanther AAA-FAMILY ATPASE 2.4e-260
    superfamily P-loop containing nucleoside triphosphate hyd 2.6e-69
    superfamily P-loop containing nucleoside triphosphate hyd 9.1e-45
    Gene3D no description 1.2e-35
    Gene3D no description 0.00000000000013
    Gene3D no description 1.4e-54
    Gene3D no description 5.8e-17
    HMMPfam ATPase, AAA-type, core 3.3e-29
    HMMPfam ATPase, AAA-type, core 9.6e-39
    HMMSmart ATPase, AAA+ type, core 0.0000000000042
    HMMSmart ATPase, AAA+ type, core 1.1e-19

    See the detailed result >

    AT2G03670.1

    Model type
    Protein coding
    Short Description
    cell division cycle 48B
    Curator Summary
    CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B
    Computational Description
    cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR