K05724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05724

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05724

Determination of introduced cDNA(s)

  • J013029F19 - Rice Full-length cDNAs - Original: J013029F19

    full reading [+] show sequence

    Nucleotide sequence: J013029F19 - full reading 
    GACCCCCCAC ACCCCCCTCT CCTCTCCCCA CTCCAAATCT CCCTCCTCCT 
    CTTCGTCTTC TTCCTTCCCC CTTGGGCACT TGGCCTAGCT ACTAGTACTA 
    CTTCCCCCAT GCCCCTCCAC TCCTATGATC CTTCCTCCTC CCCACCCTCC 
    CTGGTTTCTT GATCCATCCT TTCTCATCCA GATTTGAGCC CCCGCCTTCT 
    CCGTCCCCCC CGGATTCCTC GCTTTCTGCC CAGAAATTTG CTGGCGTTGG 
    GGGGGCTCGG AGATGTCCGG CGGCGTGCAG GAGCAGTTTG AGATCAAGTT 
    CCGGCTGCCG GACGGCACCG ACATCGGGCC CAAGAGGTAC CCGGCGGCCT 
    CCACCGTCGC CACGCTCAAG GAATCCATCG TTGCTCAATG GCCTAAAGAT 
    AAGGAAAAGG GCCCAAGGAC TGTAAATGAC CTCAAGCTTA TTAATGCTGG 
    GAAGATATTG GAGAACAACA AAACCCTTTC AGAATGCAAA AGCCCAATTT 
    GTGACTTCTC TGGATTGACA ACAATGCATG TCGTAGTTCG TGCTCCTACT 
    TCAGACAAAC AGTCCAATAA AATAGTTGCC AAGAAGCCAA AGGATTTCAG 
    GTGTGGTTGT TCCATCATGT GACAGCTTTG TGAATAGTAG CAGTACAGCG 
    AGGAAGTGTC AGCTATTGAA CTCCTCCCCT TTTTTGGCTC TTGCTAGAGT 
    GTTGTATGAT GCCTGAGGCG CTTTCTCCTT TCATTTTTCT TTCACTGTAT 
    TATGGGTGGC TCATTGCCCA AAATCCTGAG TTGCATCGAG TACATGACTT 
    GAAGTTATTG GTCTAAAATC TAAATTCGTT CCATCTCATC C

    Gene models with high sequence identity

    1. AT1G22050.1 [+] show detail - membrane-anchored ubiquitin-fold protein 6 precursor
      E-value: 2e-34; Score: 142.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-like 8.1e-24
    Gene3D no description 3.6e-43
    ProfileScan Ubiquitin supergroup 9.787

    See the detailed result >

    AT1G22050.1

    Model type
    Protein coding
    Short Description
    membrane-anchored ubiquitin-fold protein 6 precursor
    Computational Description
    membrane-anchored ubiquitin-fold protein 6 precursor (MUB6); CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 5 precursor (TAIR:AT1G77870.1); Has 161 Blast hits to 161 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR