K05729

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05729

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05729

Determination of introduced cDNA(s)

  • J013147K19 - Rice Full-length cDNAs - Original: J013147K19

    full reading [+] show sequence

    Nucleotide sequence: J013147K19 - full reading
    ATTTAGATTC AATGGAAATT CAGAATCATG GTGTCGATTT TGATGCCGCG 
    GAACCCTCTA ACGCCAGGAA TGAGTTGCAA ATGGATAAAA GAGAAGAAAC
    TTCTGAGGAA GATTTGGATG ACCAAATGGA AGAAACAGAA GATCCTTCTG
    AGGAAGAATT GGATGATCTC GTGCTTAACA TCGTGACTTG CAAGCCAAAA
    AGCTCTGTAG CACAATTGAA TAGCGAAAAG CAAGCAGCGG ATAAGGACTC
    GCGCTTCAGA AAACGTCAAC AATTTGAAGA ATCTTCTCTG CAGAAGAGGC
    ATAAATCCTC TGATTTCTCT GAAACTAGAA ATAGGAAACA GTCTTTCCCT
    GCTATATCAG GAGCCATCCA AAATGAACAA AAATCTTCAG ATTTGTCAGG
    AAAAGGTACA CATGAGTTCT CATCAGAACT CGATGGAGAT AAAAGTTCTG
    CTAGTGTCCA AGATGTTGAA GCACTAGCAG ATTCTTCTAC CAGAAATGGG
    AGTGAACAAA ATTCGCTTGC TAGTGAACCT AAAAGAGTTT CCTTGTGGAC
    TCAGAAATCT GCCTGGAGGG ATCTTGTTGG TGGCATGGGG AGTGCATCTT
    TCAGTCTATC ACAAATATTG CCAAACACCA ATCCAGCACC ACCAAAAGTT
    TCAAATGCTA CCGAGGCCTC TGCTTCACAT GCTGAGTCCA GGACGAAAGT
    GAAACCAAGC GGGAAATCTT TGAAACCCTC GGAAGCTGCA ACTCAGCTCT
    TGCCTGAGCA GAAGATGCCT ACAAGTTCCA TGGCAATGCT GTCTAGTGAG
    CGTAAGGAGA ATAATAAGCT GGAAAAGGAG AGGGTGGTTC CAAAGATCAC
    TATTGGTGAA GTGTGTCCGT TCATGAGAAA TTCAGAGTCA GAAAAGCAAT
    GGTCAAAGGC AAAGAAGGTT CTGACTGGTT TCATCAAGAA GGGCAATGAG
    AGCACTGGAT CGAATGTCGG GAAAGGGAAG CCATCAACAA GGAGATAACA
    ACGTAGCATG TCATTCCAGC TTCATCTTGT TGAACTACAA GCTCGGTAGC
    ATGTCATTCC AGCTTCATCT TGTTGAACTA CAAGCTCGGT GGTTTCGTGT
    CTCATAGGAA CATGTGTTAT TTTGTTGATT GGTCTCATAG TCTGCCTGTT
    AAGAATGATC TGTCTTTGTT TGTGAAGCAC AATGCTATGT ACGAGTTTTG
    TTCAAATTGT TATTATTCTT TGTACGAGCA ATTTAAAGTC AAACATGTTT
    C

    Gene models with high sequence identity

    1. AT5G58130.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-06; Score: 50.40

     

    InterPro Scan Digest

    See the detailed result >

    AT5G58130.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.
    Computational Description
    REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR