K05731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05731

Determination of introduced cDNA(s)

  • J033143C16 - Rice Full-length cDNAs - Original: J033143C16

    full reading [+] show sequence

    Nucleotide sequence: J033143C16 - full reading
    GGCTGGAGTC ACCCGAAGAC CGATAACTCC TCGAAGAGGC ACTGTGCTGA 
    ACAAGGTAGC TGATCTTATT GACCCAGCTA CGGGCTGGTG GGATAAACCA
    CTAGTGGAGG AGATTTTTTG GGAGTCTGAT GCCAGGAACA TTCTGGCCAT
    CCCGGTGAGA TTAGACACAA ATGATTTTGT AGCCTGGCAT TTTGATACAA
    GAGGAGTGTA CTCGGTCAAA TCTGCGTACC ATGTCCTGGA AGATCAAAGG
    GAGAGATCGG CGAAGAAGCA AGAGGGCGGT TCATCCTCTG GAGCGGTGAA
    CCAGCGGAAT TTCGAGTGGG ATAAAATCTG GAGTTTGCAA TGCATTCCTA
    AAGTCAAACA GTTTATCTGG CGGCTTGCCC ATAACAGCCT CCCCCTGAAA
    CTCAACATCA AAAGGAGAGT ACCAGACGCT GAAACTCTAT GCCCGGTCTG
    CAAAAGGTTT GATGAGAATG GTGGACACTG CTTCCTGCAA TGCAAGCCCA
    TGAAACTCTG CTGGAGAATT TTATGCCTTG AAGATATCCG TTTAAGCTTG
    ACTCAGCTTG TTTCTGCTAG AGATGTGGTT CAGACCATTT TGAAGCTGGA
    GAATGATCGA AGAATGGAGG TCTTCTTTCT TTTGTGGGTT TGGTGGTATG
    CACGCAACAA GGTGAACTCG GGGGAGGACG TAATCAGAGT GGAAGAAGTG
    GTCCACAAGG TGAAACAGCT GATCTGTGAT CATGCCTCTC TGCGCAAAGG
    AAAACATCCC AAGGTGAATG TGCAAAGAAA TAAGTGGGTT CCCCCTGTAG
    ATGGTAATCT GAAGCTCAAC TTTGATGGAG CCTTCCGAGC TGTAAACAAG
    TCTGGTGGTT ATGATTTCCT GGTTCGTGAC CTCCGTGGAT GTGCTGTTCT
    TGCGGGTGCC GGCTGCCTGG AACATGTACA TGATGCTTTT GCAGCTGAAG
    CTGAAGCTGG TTTAGCAGGC CTAAAATCTG CTATTTCGCA TGGTATTAAC
    TCTGTCCAGG TGGAAACTGA TTCACCATCC TAGTGAGAGC CTTTCACTCT
    CATGAGTACG CTCTCTCTCC TTGCAGTTCT ATCGTAAGGG AGATCAAGGA
    TCTCGTCCAT TTAAATTTTT CTAGTGTTGT GTTTAATTAT GCCCCGTGAT
    CATGTAATGT GGCTGCGCAT AAGTTAGCTC AAATGGGTGT GTGCTGGGAA
    TTGGGTCAAG CAAGTGTGTG GGCTGACCTG TCCCTGACAT TGTACAAACT
    ATTGTGGATC GTGGTATCAC TGATCCTAGT ATTTAATAAA GCGCGCCGGT
    TTAACCC

    Gene models with high sequence identity

    1. AT4G29090.1 [+] show detail - Ribonuclease H-like superfamily protein
      E-value: 3e-17; Score: 87.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RE 3.4e-16
    HMMPanther RNA-directed DNA polymerase (reverse transcriptase), related 3.4e-16

    See the detailed result >

    AT4G29090.1

    Model type
    Protein coding
    Short Description
    Ribonuclease H-like superfamily protein
    Computational Description
    Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR