K05838

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1	rosette leaf (PO:0000014)	upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05838

Determination of introduced cDNA(s)

J023113F04 - Rice Full-length cDNAs - Original: J023113F04

full reading [+] show sequence

GGGGTTTTGG ACTGTAGCTG CTGCCCCGAC GCGCTGCTCG CTGCCCCACT 
CTCTCCCCAT TCCCCTCCAC GCCGCCGCCG CCGCCGCCGC GTGGATGGCC 
GGAGTTTCCG CCGCCTCCGC CGCCGGGAAG ATCGGGAGCT TCCTCTCCAA 
GAGGCCGTAC GCGCCGCCGT CCTGGGCCTC GCACCTGTCC CCCGCCCCCT 
CGCAGACCTT CTCGCTCGGC CATTTCCCGA CGCCGATCCA CAAGTGGAAT 
CTGCCCAATT TGCCGAATGG CACGGAGGTG TGGATCAAGC GAGACGACAT 
CTCAGGCATG CAGTTGAGCG GGAACAAGGT CCGGAAGCTC GAGTTCCTGA 
TGGCAGATGC CGTCGCGCAG GGCGCTGACT GCGTTATAAC TGTAGGTGGC 
ATCCAGAGCA ATCACTGCCG TGCCACCGCA GTGGCTGCAA AGTATATAAA 
TCTTGATTGT TATCTGATAC TGCGCACATC CAAGCTTCTT GTGGATAAGG 
ACCCTGGTTT GGTTGGGAAT CTCCTTGTTG AGAGATTGGT GGGAGCGCAT 
ATTGATCTTG TTTCAAAAGA AGAATATGGA AAAATTGGCA GTGTGGCTTT 
AGCGGACTTG CTGAAAAAGA AGCTTTTGGA AGAAGGCCGA AAACCATATG 
TTATTCCTGT TGGTGGATCA AACTCTCTAG GAACTTGGGG ATATATAGAA 
GCAATAAGGG AGATTGAACA TCAAATTCAG ATATCAGGTG ATGTTCAGTT 
TGACGACATT GTTGTTGCAT GTGGCAGCGG TGGAACCATT GCTGGTCTTG 
CTTTAGGATC AAAATTGAGT AGCTTAAAGG CAAAAGTCCA TGCTTTCTCT 
GTTTGTGATG ATCCTGGATA TTTCCATTCC TATGTTCAAG ACCTGATTGA 
TGGACTTCAT TCTGATTTGC GTTCACATGA TTTAGTCAAC ATTGAAAATG 
CTAAGGGCTT AGGTTATGCC ATGAACACAG CTGAGGAGCT TAAGTTTGTT 
AAAGATATAG CTACAGCAAC AGGCATTGTC CTTGATCCAG TCTACAGTGG 
AAAGGCAGCA TATGGAATGC TGAAAGACAT GGGTGCTAAT CCAGCTAAGT 
GGGAAGGGCG AAAAATTCTT TTTGTACATA CAGGTGGTCT TCTTGGTTTG 
TATGATAAGG TTGATGAGTT ATCATCTTTG AGTGGGAGTT GGCGCAGAAT 
GGATCTTGAA GAATCTGTTC CACGCAAAGA TGGAACTGGT AAGATGTTCT 
GATTGCTATG CTCCAAAATT GCTTCCATTG TTGTTAGAGG TTTCAGACAT 
CTCATTGTCT AAAAAGAGTA TTCGCCTCAA TTTGTACGAC AAAATTCAAA 
GCAGATGGTT AATGTAAAAC ACTGTTTGTT ATATTTAAAG AATAAAGCAT 
ATATTTCTGC CATTTGG

Gene models with high sequence identity

AT1G48420.1 [+] show detail - D-cysteine desulfhydrase
E-value: 1e-154; Score: 543.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Pyridoxal phosphate-dependent enzyme, beta subunit	6.8e-24
superfamily	Pyridoxal phosphate-dependent enzyme, beta subunit	7.8e-64
HMMTigr	Pyridoxal phosphate-dependent deaminase	1.1e-177
HMMPanther	1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE	1.9e-120
HMMPanther	SER/THR DEHYDRATASE, TRP SYNTHASE	1.9e-120
Gene3D	no description	7.7e-54

See the detailed result >

AT1G48420.1

Model type: Protein coding
Short Description: D-cysteine desulfhydrase
Curator Summary: Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.
Computational Description: D-cysteine desulfhydrase (D-CDES); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate deaminase activity, D-cysteine desulfhydrase activity, cobalt ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, ethylene biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Pyridoxal phosphate-dependent deaminase (InterPro:IPR005966); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT3G26115.1); Has 2814 Blast hits to 2813 proteins in 938 species: Archae - 31; Bacteria - 1992; Metazoa - 30; Fungi - 102; Plants - 101; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink).
Link: InterPro Scan - TAIR