K05944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05944

Determination of introduced cDNA(s)

J023079I03 - Rice Full-length cDNAs - Original: J023079I03

full reading [+] show sequence

GGAACGCAAA ACTAATCACC TGTGTATGTA AACCGTTGAG TCATCCCCTT 
CGCGTGCGTC ACGTTCCAAA TCAAACGGAG ATCGGGAGAA GAGACCGAAC 
AGTCTGAACT CTGAAGCTGG TCAACAATGA GGACGAGATA AACAAGCTTC 
CTGCCTACTC CGACCTTCCA TCCTCGCGTT CTCCGTCGCT TCGCCTCTCT 
CCCCGGCTCC CCCAAACCCC AAACCCCAGC TCCCGTCTCC GTCTGCTTCC 
CCGGCCGCCC GAGCTCCCCC GTACGGCCGC ACCCCACCCA TCCACCCCGC 
CGCCGGGATG GAGCTGAAGC CCGGGATGTC GGCCCTCGTC ACGGGCGGCG 
GCTCCGGCAT CGGGAAAGCA CTTTGCATTG CTCTTGCACA GAAGGGTCTA 
TTTGTGACAG TTGTTGATTT CTCTGAAGAA AATGGAAGAG AAGCCGCTTC 
ATTAGTTCAA AATGAAAATA AAAAGTTTCA TGGAGATCTT AAAGTTCCAA 
GTGCTATGTT TATTAAACGT GATGTTACTA ATGCAGGTGA TCTTTCTGCT 
GCCTTTGGAA AACATGTGGA CACATATGGT GGACTAGATA TTTGCATCAA 
TTGTGCTGGA ATTGCCATCA AGACACTAGT TTATGATGAT AGATCTGATG 
GAACTAGCAC ATGGAGGCAT GCTGTAAATG TGAACCTTGT TGCTGTTATT 
GATGGTACTC GCATTGCAAG TCAAATTATG CGATCTGGGA AGAAGCCTGG 
TGTCATAATA AATATTGGTT CAGCCGCAGG CCTTTATCCT ATGAACTTTG 
ATCCCATATA TAGTGGAACA AAAGCTGGCG TTGTTATGTT TACAAGATCA 
CTTGCTCCAT TGAAACGCCA TGGTATACGT GTCAATGTAC TCTGCCCTGA 
GTTTGTTCAA ACTAATATGG CAGAGCAACT AAGTCGTCGA ATAATAGATG 
TAACTGGTGG ATATATAAAG ATGGAAGACA TTGTTAATGG TACATTTGAA 
CTTATAAAAG ATGAAAGCAA GGCTGGTGCT TGCCTTTGGA TAACTAAACG 
AAGAGGGATG GAGTACTGGC CAACACCAGA GGAACAAAGA AAGTATATGC 
TCAATCTTCC CAAGTCAAAA AGGATGTTAA CACAAAATAC CTTTTCGACT 
GTCCAAACTC CTGAGTTCTA TGAGAAGATA GTTGTTCACA CACTTAGCCA 
TAATTTTCGC GATGCTACAA GACTTGAACG TGTGCGCTTG AGATTGCCGG 
TTGAACCACA CAATGCTCTG GTCAAAATAA TATACGCTGG TGTAAATGCT 
AGTGATGTTA ACTTCAGTGC TGGGCGTTAT TTCAGTGGTG GTGCTAAAGA 
AACTGCTGCA CGCCTTCCGT TGGATGCCGG TTTTGAGGCT GTGGGCATCG 
TTGCATCTGT TGGAGATTCA GTGAACCATA TTAAAGTTGG CAGTCCTGTA 
GCCCTTATGA TTTTTGGGGC CTATTCTGAA TTTACTCAGG TTCCAGCCAA 
GCATCTTCTT CCGGTGCCAA GACCAGATCC AGAGGTCGTT GCTATGCTAA 
CATCAGGATT GACTGCTTCA ATTGCCCTTG AGAAGGCAGG CCAAATGGCA 
TCAGGGCAAG TTGTTCTAGT TACAGCTGCT GCTGGTGGAA CAGGACAATT 
TGCTGTGCAG CTCGCAAAAC TAGCAGGCAA CAAGGTTGTT GCCACATGTG 
GTGGCAAATG TAAAGCTGCA CTTCTGTCTT CCTTAGGAGT TGATAGAGTT 
ATCAACTACC AAAATGAAAA GATCAAAGAT GTTCTGAAAA AAGAGTTTCC 
AAGAGGAGCA GATATCATAT ATGAATCGGT TGGTGGGGAA ATGTTTGACT 
TATGCTTGAA TGCACTTGCA GTCCATGGAC GCCTTATTGT AATTGGTATG 
ATCTCCCAGT ATCAAGGAGA GCATGGATGG AAGCCACGGA ACTACACTGG 
ACTATGTGAT AAGATTCTTG CTAAAAGTCA AACTGTGGCT GGTTTTTTCC 
TAATCCAGTA TGCTCACTTG TGGCAAGATC ATCTTGACAA ACTTTTTGAC 
CTGTATGCCT CTGGAAAGCT AAAGGTTTCC CTTGACCCGA AGAAATTCGT 
GGGTGTAGCT TCTGCGCCTG ATGCGGTAGA ATATCTTCAT TCTGGCAAGA 
GTGTTGGCAA GGTTGTTGTG TGCATTGATC CGTCATACAG TCAGACCCTT 
GCTAAGCTAT AGTCTGTGGA CATGAGATAC ATCATATTTC ATCGTCTAGT 
CACGAGGAAG AACAGTGCAA AAAAGACAAT TACACAGGCT ATCGGCATAC 
CGTACAACCT TGGGCTTCTT GCTCCGTTTT GTTGTCTGTG TGCGTAGCTG 
AAACATTCCC ATATTTACCC CAGCCGGGAG AAACCGAATA ACTGCATATG 
TTGTATAGCT CAGTTGTCTG AGTTTGTGGG AATAGCTCAA TTGAATGTTA 
TATATAAGAT CGTTCCATGC TCATTGTCAA ACTTATCTTG GAAAACAATG 
CTGTGTAGAA CTAGAATATT TTCTTCTGTG GCAGGGAGCC CTTTGTGTAT 
CCGTGGGGAT CATCTAACTA TCTAAGCACA CATAAGGATG TGCTTGCAAG 
TTGCAATCCA GGCCTGAAAA TTCTTG

Gene models with high sequence identity

AT1G49670.1 [+] show detail - ARP protein (REF)
E-value: 0; Score: 842.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.7e-48
superfamily	NAD(P)-binding domain	2.6e-45
superfamily	GroES-like	3.3e-27
HMMPfam	Alcohol dehydrogenase, zinc-binding	2.3e-27
HMMPfam	Short-chain dehydrogenase/reductase SDR	6.2e-18
HMMPfam	Alcohol dehydrogenase GroES-like	1.8e-10
HMMPanther	ALCOHOL DEHYDROGENASE	1.9e-97
HMMPanther	Alcohol dehydrogenase superfamily, zinc-containing	1.9e-97
HMMSmart	Polyketide synthase, enoylreductase	6.5e-15
FPrintScan	Glucose/ribitol dehydrogenase	7.9e-23
FPrintScan	Glucose/ribitol dehydrogenase	7.9e-23
FPrintScan	Glucose/ribitol dehydrogenase	7.9e-23
FPrintScan	Glucose/ribitol dehydrogenase	7.9e-23
FPrintScan	Glucose/ribitol dehydrogenase	7.9e-23
FPrintScan	Short-chain dehydrogenase/reductase SDR	7.1e-09
FPrintScan	Short-chain dehydrogenase/reductase SDR	7.1e-09
FPrintScan	Short-chain dehydrogenase/reductase SDR	7.1e-09
PatternScan	Short-chain dehydrogenase/reductase, conserved site	0
PatternScan	Quinone oxidoreductase/zeta-crystallin, conserved site	0
Gene3D	NAD(P)-binding domain	1.1e-45
Gene3D	no description	1.3e-15
Gene3D	NAD(P)-binding domain	3.3e-43

See the detailed result >

AT1G49670.1

Model type: Protein coding
Short Description: ARP protein (REF)
Curator Summary: molecular function has not been defined. Was shown involved in oxidative stress tolerance.
Computational Description: NQR; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1); Has 139834 Blast hits to 139487 proteins in 3900 species: Archae - 1368; Bacteria - 93458; Metazoa - 6844; Fungi - 8617; Plants - 3827; Viruses - 2; Other Eukaryotes - 25718 (source: NCBI BLink).
Link: InterPro Scan - TAIR