K05944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05944

Determination of introduced cDNA(s)

  • J023079I03 - Rice Full-length cDNAs - Original: J023079I03

    full reading [+] show sequence

    Nucleotide sequence: J023079I03 - full reading
    GGAACGCAAA ACTAATCACC TGTGTATGTA AACCGTTGAG TCATCCCCTT 
    CGCGTGCGTC ACGTTCCAAA TCAAACGGAG ATCGGGAGAA GAGACCGAAC
    AGTCTGAACT CTGAAGCTGG TCAACAATGA GGACGAGATA AACAAGCTTC
    CTGCCTACTC CGACCTTCCA TCCTCGCGTT CTCCGTCGCT TCGCCTCTCT
    CCCCGGCTCC CCCAAACCCC AAACCCCAGC TCCCGTCTCC GTCTGCTTCC
    CCGGCCGCCC GAGCTCCCCC GTACGGCCGC ACCCCACCCA TCCACCCCGC
    CGCCGGGATG GAGCTGAAGC CCGGGATGTC GGCCCTCGTC ACGGGCGGCG
    GCTCCGGCAT CGGGAAAGCA CTTTGCATTG CTCTTGCACA GAAGGGTCTA
    TTTGTGACAG TTGTTGATTT CTCTGAAGAA AATGGAAGAG AAGCCGCTTC
    ATTAGTTCAA AATGAAAATA AAAAGTTTCA TGGAGATCTT AAAGTTCCAA
    GTGCTATGTT TATTAAACGT GATGTTACTA ATGCAGGTGA TCTTTCTGCT
    GCCTTTGGAA AACATGTGGA CACATATGGT GGACTAGATA TTTGCATCAA
    TTGTGCTGGA ATTGCCATCA AGACACTAGT TTATGATGAT AGATCTGATG
    GAACTAGCAC ATGGAGGCAT GCTGTAAATG TGAACCTTGT TGCTGTTATT
    GATGGTACTC GCATTGCAAG TCAAATTATG CGATCTGGGA AGAAGCCTGG
    TGTCATAATA AATATTGGTT CAGCCGCAGG CCTTTATCCT ATGAACTTTG
    ATCCCATATA TAGTGGAACA AAAGCTGGCG TTGTTATGTT TACAAGATCA
    CTTGCTCCAT TGAAACGCCA TGGTATACGT GTCAATGTAC TCTGCCCTGA
    GTTTGTTCAA ACTAATATGG CAGAGCAACT AAGTCGTCGA ATAATAGATG
    TAACTGGTGG ATATATAAAG ATGGAAGACA TTGTTAATGG TACATTTGAA
    CTTATAAAAG ATGAAAGCAA GGCTGGTGCT TGCCTTTGGA TAACTAAACG
    AAGAGGGATG GAGTACTGGC CAACACCAGA GGAACAAAGA AAGTATATGC
    TCAATCTTCC CAAGTCAAAA AGGATGTTAA CACAAAATAC CTTTTCGACT
    GTCCAAACTC CTGAGTTCTA TGAGAAGATA GTTGTTCACA CACTTAGCCA
    TAATTTTCGC GATGCTACAA GACTTGAACG TGTGCGCTTG AGATTGCCGG
    TTGAACCACA CAATGCTCTG GTCAAAATAA TATACGCTGG TGTAAATGCT
    AGTGATGTTA ACTTCAGTGC TGGGCGTTAT TTCAGTGGTG GTGCTAAAGA
    AACTGCTGCA CGCCTTCCGT TGGATGCCGG TTTTGAGGCT GTGGGCATCG
    TTGCATCTGT TGGAGATTCA GTGAACCATA TTAAAGTTGG CAGTCCTGTA
    GCCCTTATGA TTTTTGGGGC CTATTCTGAA TTTACTCAGG TTCCAGCCAA
    GCATCTTCTT CCGGTGCCAA GACCAGATCC AGAGGTCGTT GCTATGCTAA
    CATCAGGATT GACTGCTTCA ATTGCCCTTG AGAAGGCAGG CCAAATGGCA
    TCAGGGCAAG TTGTTCTAGT TACAGCTGCT GCTGGTGGAA CAGGACAATT
    TGCTGTGCAG CTCGCAAAAC TAGCAGGCAA CAAGGTTGTT GCCACATGTG
    GTGGCAAATG TAAAGCTGCA CTTCTGTCTT CCTTAGGAGT TGATAGAGTT
    ATCAACTACC AAAATGAAAA GATCAAAGAT GTTCTGAAAA AAGAGTTTCC
    AAGAGGAGCA GATATCATAT ATGAATCGGT TGGTGGGGAA ATGTTTGACT
    TATGCTTGAA TGCACTTGCA GTCCATGGAC GCCTTATTGT AATTGGTATG
    ATCTCCCAGT ATCAAGGAGA GCATGGATGG AAGCCACGGA ACTACACTGG
    ACTATGTGAT AAGATTCTTG CTAAAAGTCA AACTGTGGCT GGTTTTTTCC
    TAATCCAGTA TGCTCACTTG TGGCAAGATC ATCTTGACAA ACTTTTTGAC
    CTGTATGCCT CTGGAAAGCT AAAGGTTTCC CTTGACCCGA AGAAATTCGT
    GGGTGTAGCT TCTGCGCCTG ATGCGGTAGA ATATCTTCAT TCTGGCAAGA
    GTGTTGGCAA GGTTGTTGTG TGCATTGATC CGTCATACAG TCAGACCCTT
    GCTAAGCTAT AGTCTGTGGA CATGAGATAC ATCATATTTC ATCGTCTAGT
    CACGAGGAAG AACAGTGCAA AAAAGACAAT TACACAGGCT ATCGGCATAC
    CGTACAACCT TGGGCTTCTT GCTCCGTTTT GTTGTCTGTG TGCGTAGCTG
    AAACATTCCC ATATTTACCC CAGCCGGGAG AAACCGAATA ACTGCATATG
    TTGTATAGCT CAGTTGTCTG AGTTTGTGGG AATAGCTCAA TTGAATGTTA
    TATATAAGAT CGTTCCATGC TCATTGTCAA ACTTATCTTG GAAAACAATG
    CTGTGTAGAA CTAGAATATT TTCTTCTGTG GCAGGGAGCC CTTTGTGTAT
    CCGTGGGGAT CATCTAACTA TCTAAGCACA CATAAGGATG TGCTTGCAAG
    TTGCAATCCA GGCCTGAAAA TTCTTG

    Gene models with high sequence identity

    1. AT1G49670.1 [+] show detail - ARP protein (REF)
      E-value: 0; Score: 842.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.7e-48
    superfamily NAD(P)-binding domain 2.6e-45
    superfamily GroES-like 3.3e-27
    HMMPfam Alcohol dehydrogenase, zinc-binding 2.3e-27
    HMMPfam Short-chain dehydrogenase/reductase SDR 6.2e-18
    HMMPfam Alcohol dehydrogenase GroES-like 0.00000000018
    HMMPanther ALCOHOL DEHYDROGENASE 1.9e-97
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 1.9e-97
    HMMSmart Polyketide synthase, enoylreductase 0.0000000000000065
    FPrintScan Glucose/ribitol dehydrogenase 7.9e-23
    FPrintScan Glucose/ribitol dehydrogenase 7.9e-23
    FPrintScan Glucose/ribitol dehydrogenase 7.9e-23
    FPrintScan Glucose/ribitol dehydrogenase 7.9e-23
    FPrintScan Glucose/ribitol dehydrogenase 7.9e-23
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000071
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000071
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000071
    PatternScan Short-chain dehydrogenase/reductase, conserved site 0
    PatternScan Quinone oxidoreductase/zeta-crystallin, conserved site 0
    Gene3D NAD(P)-binding domain 1.1e-45
    Gene3D no description 0.0000000000000013
    Gene3D NAD(P)-binding domain 3.3e-43

    See the detailed result >

    AT1G49670.1

    Model type
    Protein coding
    Short Description
    ARP protein (REF)
    Curator Summary
    molecular function has not been defined. Was shown involved in oxidative stress tolerance.
    Computational Description
    NQR; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1); Has 139834 Blast hits to 139487 proteins in 3900 species: Archae - 1368; Bacteria - 93458; Metazoa - 6844; Fungi - 8617; Plants - 3827; Viruses - 2; Other Eukaryotes - 25718 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR