K06051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06051

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06051

Determination of introduced cDNA(s)

  • J023118F07 - Rice Full-length cDNAs - Original: J023118F07

    full reading [+] show sequence

    Nucleotide sequence: J023118F07 - full reading 
    GGGTTTGGCA TTTGGAATTG ACAGCGCAAA TGCAGTTGTC CTGGAGGATA 
    TCAACCAAAT AATTCCCCTC CATCCTTCAG TAATTGGCCT CCAAACACAG 
    AGCCCGAATG AGCATGGCAA GGGAGCACTT TGTGCTTATT CATGGAGAAG 
    GGCATGGATC CTGGTGTTGG TTCAAGCTTC GTTGGCTCCT TGAGAGCTCT 
    GGCTACCAAG TAACATGCAT AGACCTTGCT GGAGCTGGTG TTGACCCTAC 
    CGACCCCAAC ACAGTTCAAT CGTTTGAGCA GTATGACAAG CCGCTCCTGG 
    ACCTCATCTC AGCTATACCA GAGGATGAGA AGGTGATTTT GGTTGGACAT 
    GGTTCAGGAG GGTTGAGTCT TATTCATGCA ATGCACCAAT TTGTTGACAG 
    GATTAGACAA GCAATTTTTG TGGCAGCTAC GATGCTACCA TTTGGACTTC 
    AAACTGACGA AGATAAGAAA GATGGTTTAC CAACATTGCC TGAGAATGAG 
    ATCAATTTGA TATTCGGCAC AGGAGCAGAT GATCCTCCAA CAACTGCTGC 
    CCTGAGACCA GAATTCCAGA GAGAGAGATT ATCCCAACAG AGTCCTGAAG 
    AGGAATCAGT ACTCGCTTCA ATGCTGATGC GTCCATGGCC TGTGACAGCT 
    ATTAGCACTG CAAGCTTTGA AGGAGACGAT GAGAGACTAA ATCGAATCAA 
    ACGGGTTTTC ATAAAGACAG GACGTGACCA CATGCTGGAC CCTCAGCAGC 
    AAGATTCCAT GATCAAGAAG TGGCCGCCCA GTGAGGTTTT GGAAATAGAT 
    ACGGATCATA GCCCCTTTTT TTCAGCACCA GAACAGCTCT TTAATCTAAT 
    AGTCAAATCC CTATGATGTA AATCTGCATA CAACTCAAAC ATCCAAGGAG 
    ACTTCTCCAA ATTATTGTAC CACTGCATAT ACACAACAAC TTTAAACTGA 
    TTTAGAGCCA CG

    Gene models with high sequence identity

    1. AT3G10870.1 [+] show detail - methyl esterase 17
      E-value: 1e-70; Score: 263.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.1e-68
    HMMPanther ALPHA/BETA HYDROLASE RELATED 0.00000000000024
    superfamily alpha/beta-Hydrolases 1.2e-40
    HMMPfam Alpha/beta hydrolase fold-1 0.00000000054

    See the detailed result >

    AT3G10870.1

    Model type
    Protein coding
    Short Description
    methyl esterase 17
    Curator Summary
    Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.
    Computational Description
    methyl esterase 17 (MES17); CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 18 (TAIR:AT5G58310.1); Has 1383 Blast hits to 1383 proteins in 290 species: Archae - 0; Bacteria - 591; Metazoa - 1; Fungi - 15; Plants - 599; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR