K06107

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06107

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06107

Determination of introduced cDNA(s)

  • J013169J18 - Rice Full-length cDNAs - Original: J013169J18

    full reading [+] show sequence

    Nucleotide sequence: J013169J18 - full reading 
    TGGAATCCCA TGATCCGTTG GGTACAAGGA AGAAGAGGAT ACTACTCTCC 
    AAGTAGCGAA AATCCACAAA TTCCCTCTCC GGCTCGCGCG CGCGCTCTCA 
    ATTTTTTGGG GGAAGAGAAG ATCTCCCCTT GGAGGGAACC CCGCCCAAGA 
    ATGGCGGGTC TCGGCGGCGG ATGGGGCGGC GGGTACGACG ACGACGACGA 
    CTGGGGGCTG AGCGCGGAGC AGCTCGACCA GCTCGAGCGG GACGCCTACC 
    GCAAGCTCGC CGAGCGCAAG GCCTCCTCCT CCGCCGCCTC CACCGCCACC 
    TCGCCGCTCC CCTCCGCGGC CTACTCGCCG GTCAAGAACA GCCACCACCA 
    CCCGGCATCC AGGGTTTCCC AGGAGTCTTG CTTCGGCAAG GTAGAATCAC 
    TTTCTCCTTC TCGGCTTAGT CAACCAAATG CATCGGGAAA TGCAGTTAAT 
    AATAGTCAGG GCAATATGTC TAAGGTATCA GTACATCTTT TCCTTCATTC 
    TACTGGTGTG ATCGCAGCGA AGTTCCAGTA CCACCAGAAA CTTGTGGATG 
    CAGTTCACAA GATCCCCAAA GCCAGCTGGA ACGGGAAGGA GAGGGTATGG 
    ATGTTCCCAC ACTCATCATT ATCAGTAGCA GAGGAAGTTC TTAGTACAGT 
    ACCTGGAATA GCTGTTGAGG TCCAAAAACT GGATCCGCTG GTTAAGCGCG 
    CACTAACTGC TTCTTTATAT GCCGGAGATC TTCGAGATTT GTATGGCAAG 
    ATTCCAACTG ATGTTGAGTC AAAGCTTATG CCGTTTCAGC GTGAAGGTGT 
    CAGGTTTGCT TTACAGCATG GTGCCAGGAC CCTGATAGCA GATGAAATGG 
    GTCTTGGCAA GACATTACAG GCAATTGCTG TTGCTTCTTG CCTTCATGAT 
    GCCTGGCCAG TTCTTGTAAT CTCTCCATCA TCCTTGCGAT TACATTGGGC 
    TTCTATGATT CAGCATTGGC TTAACATCCC CACGGAAGAT ATCTTGGTGG 
    TGCTACCACA AACTGGAGGA TCAAATAAAG CAGGATACAG ATTGGTATAT 
    TCAAATACTA AAGGGGATTT TAATCTGGAT GGGGTGTTCA ATGTGATATC 
    TTATGATGTT GTTCCCAAGA TAAAGGACAT GCTTCTGGAC TTGGATTTTA 
    AGATTGTTAT AGCTGATGAA TCACACTTTC TGAAGAATGC CCAAGCAAAG 
    AGAACAATGC ATTCACTTCC TGTTCTGCAG AAAGCTAAAT ATGTGGTTTT 
    GCTAAGTGGC ACCCCTGCGT TATCTCGCCC TATCGAGCTG TTTACTCAGC 
    TCCAGGCATT GTATCCAACT GTATACAAGA ATGTTAATGA GTATGGTAAT 
    AGATATTGCA AAGGTGGCTT TTTTGGGCTT TATCAAGGTG CTAGCAATCA 
    TGAGGAGCTT CATAATTTGA TGAAAGCAAC TGTCATGATC CGCAGGTTGA 
    AGAAAGATGT CCTTTCACAG TTGCCTGTTA AACGCAGACA ACAGGCCTTT 
    CTGGATTTAA GTGAGAAAGA GATGAGACAT ATTCGTGCTC TATTTCATGA 
    GTTGGAGACT GTGAAGATCA AAATCCAGTC CTGTGACTCC CAGGAGACGA 
    TGGACTCTCT CAAATTTGCT CAGAAGAATC TTATTAACAA GATCTACAAT 
    GATTCAGCTG AAGCCAAAAT TCCAGCAGTG CTAGATTACC TGGGTACTAT 
    AATTGAGGCC GAGTGCAAAT TTTTAATATT TGCACATCAT CAATCCATGC 
    TTGAAGCTAT TCACCAACAT CTCTTGAAAA AGAAAGTTAA GTGCATAAGA 
    ATTGATGGTC AAACACCTGT ACCTGTAAGA CAGACTCTAG TCACAGATTT 
    CCAGAATAAG GATGACATCA AGGCAGCAGT GTTATCCATA AAAGCTGGAG 
    GTGTTGGGTT AACTTTGACA GCAGCAAGTA CAGTAATCTT TGCTGAGTTA 
    TCATGGACTC CAGGTGACCT TATTCAAGCC GAAGACCGTG CCCATCGTAT 
    TGGTCAGGTT TCTTCGGTGA ACATATATTA CCTTCTTGCA AATGACACTG 
    TGGATGACAT TATATGGGAC GTTGTTCAAG GCAAACTTGA GAATTTGGGA 
    CAGATGCTGG ATGGGCAGGA GAAAACGCTG GATGTGTCCC AGAGCGACAC 
    TAGGCCCAGC CCTTCCAAGC AGAAGACGCT CGACGCCTAC CTCAAGCGAT 
    GCAGCAATTC CACAGAAGCT GATCAGCCCA AGCTCAAGAA CCCTAGGTTC 
    TGACATTTCT CAGGGTTTTT AGCTCTACTA TGTTTTTGTT TGGCAATTGG 
    CATGACCCTC TTGCCTTAAA CGAAGGAATG CTGCAGTGTC AGGTAGCTGT 
    GTGTTGGTGT TATGATCACA GCCATGCTGT ATTTTGTATT ACCCAGCTAA 
    ATGCCCGTGC GTTGCAATGA AAATTAAGAA TAACTTTGAT C

    Gene models with high sequence identity

    1. AT1G48310.1 [+] show detail - chromatin remodeling factor18
      E-value: 0; Score: 855.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 14.552
    ProfileScan DNA/RNA helicase, C-terminal 14.323
    HMMPfam SNF2-related 1.1e-32
    HMMPfam DNA/RNA helicase, C-terminal 1.4e-11
    HMMPanther HARP (SMARCAL1)-RELATED 1.8e-166
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 1.8e-166
    HMMSmart DEAD-like helicase, N-terminal 2.3e-18
    HMMSmart DNA/RNA helicase, C-terminal 5.9e-18
    Coil coiled-coil 0
    Gene3D no description 1e-06
    superfamily P-loop containing nucleoside triphosphate hyd 4.1e-21
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-16

    See the detailed result >

    AT1G48310.1

    Model type
    Protein coding
    Short Description
    chromatin remodeling factor18
    Computational Description
    chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR