K06119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06119

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06119

Determination of introduced cDNA(s)

  • J013044J20 - Rice Full-length cDNAs - Original: J013044J20

    full reading [+] show sequence

    Nucleotide sequence: J013044J20 - full reading 
    GGGCTGCAGA GACACTTCTT CGCAGTTCGC GTCGCGCACA CACTCTCCCT 
    TTGCCTCGCG CAGAGGCGGC CGCGCCTTCT CCGCCGCGAG GCATGGCCGG 
    CGCCGCCGCC GCCGTGGAGG ACGCCGGGAT GGACGAGGTC CAGAAGCGGC 
    TCATGTTCGA CGACGAATGC ATTTTGGTGG ATGAACAAGA CAATGTTGTT 
    GGCCATGAAT CAAAATATAA CTGCCATCTG ATGGAAAAAA TCGAATCTGA 
    AAATCTACTT CATAGGGCTT TCAGTGTATT CCTGTTCAAC TCAAAATATG 
    AACTCCTACT CCAGCAACGA TCTGCAACAA AGGTTACATT TCCTCTAGTT 
    TGGACCAACA CTTGCTGCAG CCATCCTCTG TACCGTGAGT CTGAGCTTAT 
    ACAGGAAAAC TACCTTGGTG TTAGAAATGC TGCTCAGAGG AAGCTCTTGG 
    ATGAGCTGGG CATCCCAGCT GAAGATGTGC CAGTTGACCA ATTCACCCCT 
    CTTGGTCGGA TGCTTTACAA GGCCCCATCT GATGGAAAAT GGGGTGAACA 
    CGAGCTTGAC TACCTGCTGT TCATCGTCCG CGACGTGAAG GTAGTCCCGA 
    ACCCGGACGA AGTGGCCGAT GTGAAATACG TGAGCCGTGA GCAGCTGAAG 
    GAGCTCATCC GCAAAGCGGA CGCCGGAGAG GAAGGCCTGA AGCTGTCTCC 
    CTGGTTCCGG CTGGTTGTTG ACAACTTCCT CATGGGCTGG TGGGATCACG 
    TCGAGAAAGG CACCCTCAAC GAGGCCGTGG ACATGGAGAC CATCCACAAG 
    CTGAAGTAAG GACTGCGATG TTGTGGCTGG AAAGAATGAT CCTGAAGACT 
    CTGTTCTTGT GCTGCTGCAT ATTACTCTTA CCAGGGAAGT TGCAGAAGTC 
    AGAAGAAGCT TTTGTATGTT TCTGGGTTTG GAGCTTGGAA GTGTTGGGCT 
    CTGCTGACTG AGAGATTCCC TTATAGAGTG TCTATGTTAA TTTAGCAAAC 
    TTCTATATTA TACATGATTA GTTAATTGTT CGGTGTCTGA ATAAAGAACA 
    ATAGCATGTT CCATGTTTAT TTGCTACATA TATGATGATG ATGATGCCAT 
    TCCCTCGT

    Gene models with high sequence identity

    1. AT3G02780.1 [+] show detail - isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
      E-value: 3e-118; Score: 421.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Isopentenyl-diphosphate delta-isomerase, type 1 1.8e-101
    superfamily NUDIX hydrolase domain-like 2.2e-37
    HMMPanther Isopentenyl-diphosphate delta-isomerase, type 1 4.9e-121
    HMMPIR Isopentenyl-diphosphate delta-isomerase, type 1 2.3e-123
    HMMPfam NUDIX hydrolase domain 4.9e-27
    Gene3D NUDIX hydrolase domain 9.2e-48

    See the detailed result >

    AT3G02780.1

    Model type
    Protein coding
    Short Description
    isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
    Curator Summary
    Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.
    Computational Description
    isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (IPP2); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, flower development, isoprenoid biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl diphosphate isomerase 1 (TAIR:AT5G16440.1); Has 2187 Blast hits to 2186 proteins in 784 species: Archae - 35; Bacteria - 1163; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR