K06120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06120

Determination of introduced cDNA(s)

J013109H16 - Rice Full-length cDNAs - Original: J013109H16

full reading [+] show sequence

GACTCCGGTA GTCGGATGAT CCGCTCGCCG TCCACTTGGT GGTCACCACC 
TCTCGCCTCA AGCCCGCTCG TCCTCCGCTC ACCGCCGACG CGGACCAGCA 
CGAGCGTGCG GCGGAGCGGC AAGGGGAGAG ACGTGGATCG GCGCTCCGGC 
GGAGGGGACG GCTTGTCATC GGCGCCGCGG CCGAGTGGAC CGCAAGATAC 
GCGCCAGTCA ACGTGCCGTC TCCGCCGCCG TAATTGCTCG TACATCTTCC 
TCTTCTCCTC GCACATCTTT TTGCCATCCA CCGTAGGCCT TATTTGGTTT 
GGAGGGAATT GAGGAAAAAT AATTCAACAC CACAATAGAA ACCACGACCA 
CTAAGTGATC CACAATGGTC GAGATTGTGA CGGGCGCGAT CAGCACCCTG 
CTGCCGAAGC TGGGTGAGGT CCTCAGGAAG GAGTACCAGC TGCATAAGAC 
CGTCAGGGGA GAGATCATGT TCCTTATGGC CGAGCTGGAG CGAATGCAGG 
CTGCCATCCT GGAGATCTCA GAGTCAGATG AACCCAACAA GCTCGTCAAG 
CTCTGGGTGA GAGACGTCAG AGAGCTCTCC TACGACATCG AGGACACCAT 
CGACAGCTTC ATGGTCCACT TCGACAAGCA TCGCAGCTTT AGGGGCTTCA 
TCGACAGAAG CCTCAACCTG TTGACCAAGT TCAAGATTCG CCATAAGATC 
GGTGCCAACA TCAGAGACAT CAAGAGCCAC ATCAAGGAGG TGAGTGAGCT 
GCGCGATAAG TACAAGGTTG ATGGTGTTAC AGTAGCCAGG CCTGTCGGTC 
ACCAAACTGT CGATAGCCTT CGCCTGCAGT CAGCACTGTA TAAGAATGTT 
TCGGAGCTTG TTGGCACCAA GAAGAAGACC GATGATCTAG TCAGTAGGCT 
GATGGAGATG CATGATGATG TAGAGTCCAA GCGAAACTTG AAGGTTGTCT 
CCATCGTTGG TTTTGGAGGT TTGGGCAAGA CGACTCTTGC TAGTGTTGTG 
TATCACAAGC TTAAATTGGA GTTCGATTGT GGGGCTTTTG TTTCTATATC 
TCTTCATCCT AACATGGTGG GGGTATTCAA GAACATGCTC CGTCAGCTCG 
ACGAGAAAAC GTACTTGAAC ATTAACGGAG AAACATGGGA AGAAGTGCAG 
CTTATTGATG AACTAAGGAA ATTCCTTCAA AACAAGAGGT ACATCGTTGT 
TATCGATGAT ATATGGAGCA AATTTGTGTG GAAAACAATC AAATATGTGT 
TGGTTGATAA TCAACTTGGA AGCAGAATAA TTACAACAAC TCGAGCTGTA 
GACGTTGCCG AACAAGTTGG CGGTGCTTAT AAGCTTGAGC CTCTTTCACC 
TGATGATTCA ATAAAGCTAT TCAACCAAAT TATATTTCAC TCGGAAGACA 
AATGTCATCC TTATCATTTA TCCGAAGTAT CTCAAAAAAT TTTGAAGAAA 
TGTGGTGGTA TACCATTAGC TATCATTACG ATAGCTAGTA TGTTGGCTAG 
TAAAAAAGGT AATCAACATG AATACTGGTA TAAGGTGTAC CATTCCATGG 
GTTCTGGGCT TGAGGACAGT CCTGATTTGA GGAACATGAG AAGAATATTA 
TCAATCAGTT ACTATGACCT CCCTCCACAT CTGAAGACTT GTTTGTTGTA 
TTTAAGTTCC TATCCAGAGG ATTATCTGAG TACTAGGGAG ACCTTGATAT 
GGAAATGGGT AGGCGAAGGT TTCGTTGAGA CTAAACAGGG CAGTAGTTTT 
TATCAAGTAG GAGGGGAATA CATTTATGAG CTCATGAACA AGGGTATGAT 
CCAACCAGCA TGTGATATTG TTAACGATTA CCCAGAGTAT TATCGTGTAC 
ATGACATGGT GCTTGATCTC ATCACGTCCC TATCAAATGA GGAGCATTTC 
CTAACAAGAT TAGATGGACA CCCGTCCTTG TCTCTACAAA AAAAGATCCG 
CCGACTGTCC ATCCAAACAA ACGAGGAAGA GTATGTCAAG CAGTTGGCTA 
CGATGAGCTT GTGCCATTTG AGGTCACTGA CTGTGTGTGG GCAAGGTCTG 
AGTAGTCTAC TGCCAACTCT ACCAAGCATG TGCCCATTCT TACGTGTACT 
GGATTTCAGT GGTTGTGACA AAGTTGAGAA TCAACATTGT AAGGATATCT 
GCAAGTTGTT TCACCTTAGG TATTTGCGGC TATATGGTAC AAGTATAAGC 
GAGCTCCCAA AAGAGATTGC AAATCTGCAG TTTTTACAGG TCCTGGACAT 
ATCTATCACT AATATCAAAG AGCTGCCACC GACCTTTATT CAACTAAAAC 
AGCTGGTGTA CCTGCATTTC CCCAATATGA TGAGATTGCC AGACGGTCTT 
GGGAGTCTAA ACAGGCTGCA GGAAATTCCT AATGTTATCA CTATCGATTC 
TCCAACCATG TTGCACGATC TAGGTTGTCT TTCTAAGCTG AGGCGCTTAA 
CAATTTACTT CGATAAATGG GATGAGAGCT ATGAGAAACC TTTCATCCAG 
TGCCTATCCA ACCTAGTAAG CCTTGAACTC CTAGAGGTAG ATGGAACACT 
AGGTTCCACA TGTGGCAGTT TATCGCCTGG GCCTCAACGG CTTCAATCCA 
TTGACATGTC ATTCTGCACT TTAACCGCTT TTCCAGGATG GATGTCCTCA 
CTCTGCTCCC TCTCCTCCCT GCATCTCATA TTATTAACAC TTGGAGAAGA 
CGAACTGCAA GTTCTTGGGA GCATACCACA TCTCAATGAT CTCTATATAT 
CTATATCGGT GAACAAAGCC ATACATGACA AAAACAAGAG GTTGGTTATT 
GGGAAAGGCT GTCCATTCCT GTGTCTAACA CAGTTCAGTT TAGCGAGCAG 
CAGCATGTAT GTGGGATTTG CGCAAGGAGC CATGCAGAAG GTCAGGGATC 
TGAGTTTATA CTTTGGAGTA AGTGAGACAA TGGGTCAATT TGGAGATTTC 
GACTTCGGTC TGGAGAACCT CTCTTCGCTC GAGCATGTCG ATGTTTGGAT 
GCGGTGTTTT GGTTCCAAGA CAGGGGAGGC GGATGATGCA GAGATTGCAA 
TTAAGAGATC GCTCCAGTTA AACCCCAACA ACCCTACAAT GGAGCTGGAG 
AAGGTATAAC TATCTATTCT GCTCCACACA TAATTTCAAG CAAATTCATT 
TGACTGCCTT ACAATAATCT TGCTTGGTTT TCTTCTCTCT TTTTTTAATA 
CTGAAATATT ATCATCACAT GTTTGAACTA TCTACCAAAT TGTGTACCTA 
TATATTATGA GATTTATCGC G

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 2e-65; Score: 248.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Disease resistance protein	3.2e-16
FPrintScan	Disease resistance protein	3.2e-16
FPrintScan	Disease resistance protein	3.2e-16
FPrintScan	Disease resistance protein	3.2e-16
HMMPfam	NB-ARC	5.5e-66
superfamily	L domain-like	2.6e-32
superfamily	P-loop containing nucleoside triphosphate hyd	8.9e-20
HMMPanther	LEUCINE-RICH REPEAT CONTAINING PROTEIN	0.000000015
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.000000015
Gene3D	no description	8.3e-20

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR