K06141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06141

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06141

Determination of introduced cDNA(s)

  • J033105N07 - Rice Full-length cDNAs - Original: J033105N07

    full reading [+] show sequence

    Nucleotide sequence: J033105N07 - full reading 
    GAGCGGCTGC TTCTTCTTCC TCATTCCAAT CTCCCCCCAA TTTCGGTTGG 
    ATTCGTGGAG GCGGATTGGG GATTTGGATT TGGATTGGAG AGAGGGGGGA 
    GATGGACCAG GTGCTGAACA AGGTGGGGAG CTACTGGTTC AGCAAGAGGG 
    CGAGCAAGGA GATCGACTCC ATCGGCGACG ACATCAGCTC AATCTCTACA 
    AGCATTGGAA CAGGAGCTAA ATGGATGGTG AACAAGATCA AAGGGAAGAT 
    GCAGAAAGCA TTGCCAGACC TTCTCAAGGA ATATGACATG CCGGCGGGCC 
    TCTTCCCAAG GGATGCTACT AACTATGAGT TCAATGAGGA GACAAAGAAG 
    CTAACCGTGT ACATTCCTTC AGCTTGTGAT GTCGGGTACA AGGATTCGTC 
    TGTTCTGCGA TTCTTTACCT GTGTGACTGG CTACCTGGAG AAGGGAAAGC 
    TCTCTGATAT CGAAGGCTTG AAGACGAAAG TGCTTGTTTG GACCAAGGTG 
    ACTGCCATCA AGACTGAGGG ATCGAAGGTT CATTTCACTG CTGGTGTGAA 
    GAAGACCCGC AGCCGTGACG CATATGAGGT AGTCAGAGAT GGTATCCCCA 
    TAGACAAGTT CTGAGCTTGT ACCTGCCATG AAAATGTGAT GTAATTAATT 
    AGTTGACGCC TTCTACAACA AATATCAATT GTCATATCTC GTGTTATGAC 
    CTATTTAACT GAACTGTATT GCCATAATAT TGATTGTCCG GCCCAAGAGT 
    GTTTCTCAGC ACCTTAAAAA TTTGGTGCTT ATTTGGTTGT GATTGTGAAT 
    CTTGTAGACG GTTTTATGTT TACTTAGTTT AAGGCCATGT TTGGCACCAC 
    TTCAAGTCTC G

    Gene models with high sequence identity

    1. AT3G08890.2 [+] show detail - Protein of unknown function, DUF538
      E-value: 7e-65; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF538 1.9e-26
    Gene3D Protein of unknown function DUF538 1.1e-48

    See the detailed result >

    AT3G08890.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR