K06151

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06151

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06151

Determination of introduced cDNA(s)

J023049J19 - Rice Full-length cDNAs - Original: J023049J19

full reading [+] show sequence

GTATCGGCCT CTGACTTCCC TACGTTCTCC TCTCTCTCTC GGCTTCCACT 
CCCGTCTCCT CGTCTCCTCG CGTGTTCGCC CGCCGCCCTG CGCCGACCAG 
CGCAGCCGCA GCGGCGCCGG CGTCCTGCTG CTTCCGCCCG CATCCTCGCC 
GGTAAGAGGC AGAATCACTT CGTTAGGCAA GGATGAGCAA AGGCCCAGCT 
CCGTTCCTCA ACATTGGGAA GAGAGCAAAA GATCTTTTGT ACAAGGACTA 
CAATTTTGAC CAAAAGTTTT CTTTAACGAC AACTAGCAAT TCTGGTTTGG 
GTCTAACAGC CACCGGTGTG AAGATAGACG AACTCTTCAT CGGTGACATA 
CAGACACAAC ATAAAAGTGG CAAAACCACT GTTGATGTCA AGATTGATAG 
TGAATCTAGA GTGTCAACCA CAGTCACTGT TGATGAAGCC CTTACTGGTC 
TGAAGACTTC TTTTAGCTTC AGGGTTCCTG ATCAAAAGTC CGGGAAGCTT 
GATTTGCAAT ACCTTCATGA CCATTTTGCA CTGAATTCTA CCATTGGTTT 
GACATCAACG CCTTTAATTG AGCTGGCAGC AACTATCGGC ACGAATGAAC 
TTAGTGCTGG TGCTGAGGTT GGATTCGACA GCACTTCAGC TTCTGTTACT 
AAGTACAACT CAGGGATCTG CTATAACAAA CATGATTTTT CTGCTGCCGT 
ACTATTGGCT GATAAAGGGG AGACTTTAAA AGCTTCTTAT ATCCACACGT 
TCAATGAAAC CAATGGAGCT ACAGTGGCGG CTGAAGTAAC GCACAAGTTA 
AAAACAAAAG AGAACTATTT CACCATCGGG AGCTCTCATG CTATTGATTC 
TTCGACGTTG CTGAAGACAA GATTTAGCAA TGGTGGCAAA GTTGGAGTTC 
TCTGTCAGCA TGAGTGGAGG CCCAAGTCTA CTGTAAGTAT TTCTGCCGAG 
TATGATCCCA AAGTGGTGAG TTCGCCTTCA AGATTCGGCG TGGCATAGCC 
TTGAAGCCTT GATTATCACC TCCTGTACAA GTGTTAGATA CTTCTTGCCC 
GTGTGCATCC TAGCCATACT TACGAAAGCT CCACCATTTT ATGCCCGTTT 
TGTAAGTGTC TTGGCCGAAG AAACGTTGTT GTCTTGGAGT TGGTCTTAGT 
TTTGTGGAAC CCTACCACCA GCCGACTTCA TCCCGAGAAT TGAAAATACA 
GAGAGTTTTG TACTGGAAAC AATAGATTTA CTGTTTTGCT GCTTCAGAAA 
CTATTCGGTG TCGATTGTAC ACCTTGAAGA GCCCCCCTTG AAGAAGAATA 
TCAGGGTAAG TGACTAAGTG CCACGTTGGT TTGTTGCTGA GCCAAATGGG 
AGTTGGAAAT GATTCGATAT CTGCATTATT CTGTGATGCA GTTTTGGTTG 
GCTTGTTGCT GAGCCAAATG GGAGTTAGAA ATGATTTGAT ATCTGTTTTT 
TTATGCAGTT TTGGCATGCT GATGTGCCCT TTTTTTTCAA TTGTTTGCAG 
TGTACCATAT GGTCATTTCA ATTGTTTCAA GAGAGTACAC TATTTAGACA 
TTGTACTAAC AATGTTTTGT TCTGATGCTC ATCACCGCTA AATATAGTTA 
ATCTCTCC

Gene models with high sequence identity

AT5G57490.1 [+] show detail - voltage dependent anion channel 4
E-value: 6e-74; Score: 275.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1,	3.6e-122
HMMPanther	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	3.6e-122
HMMPfam	Porin, eukaryotic type	3.2e-57

See the detailed result >

AT5G57490.1

Model type: Protein coding
Short Description: voltage dependent anion channel 4
Curator Summary: Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description: voltage dependent anion channel 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 2 (TAIR:AT5G67500.1); Has 864 Blast hits to 864 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 143; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link: InterPro Scan - TAIR