K06217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06217

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06217

Determination of introduced cDNA(s)

  • J013041F08 - Rice Full-length cDNAs - Original: J013041F08

    full reading [+] show sequence

    Nucleotide sequence: J013041F08 - full reading 
    TTGGTTCACA GCGGCACCGA TGCTTTCACC TCCCAATTTA ATCAGCTCGG 
    CCGACCACCG GCAACCACGA GCCGCCTCCG CGCCTCCCCT CGGCGCACAC 
    AGCAGATCGG CGAGGTCTGA GCGCATCGTC CTCAACACCG AGTAGACCGG 
    CCGGCCGCGG CGGCCATCAT CGCTCCTACC ATGGCCAAGG AGCTCCTCGC 
    CTTCCCCGGT GTCGCCGTAC CGTACGTGCA GCAGTTTCTT GACAAGAACG 
    ATGGCATACT GAAGTGATGC CAAATTGCCA ACTGCCAAGT TTTCTTGTGC 
    TTCTTTTCCA GGTGCCTTAG CTCCGGGAGC ACGATCCATT CTCGATGCTA 
    GGCAGTTAGC TTTTTCTCCC CTTTAGCTCC TTTTTGCTTT GTCAGGCAGG 
    GGAGGCAGTT TTGCTTTGCC TCTATAAGAG ACAGTGCGAT TATTAGGCTG 
    GGCAAGTGTT AAACCGTTGC TGGGATTTGT TGGATCTATC AAAGTTGGTC 
    GGGTGGTATC TCTTGGGTGA AATAGTACTA CTGCCAGCCA GTATAGCTAT 
    ACAGCTAGTT TGCCAGGAGC TCAGATGGAG AGGCGGCTCC TGGAGGCAGC 
    CATGGTTGGC AGTGCCACAT CAATGAAGGA GATGGCTGCA CAGGATCCAA 
    GCCTGCTGCT TGGAACAACT CCTCAAGGGA ACACCTGCCT CCACATCTCC 
    TCCATCCATG GCCATGAGGG ATTTTGCAAG GATGTGCTGA CGCTAAACAA 
    TTCTCTTCTC ACTGTCGCAA ACATGGATGG TGAGACACCA CTGCTCACTG 
    CCGTGACAAA TGGACACATG TCTTTGGCCT CTATTCTACT TGAATGCTGC 
    TGCACACTAG GGTTCAGTGA GGCAATCTTG CAACAAGACA GAAATGGTTG 
    TAATGCACTG CACCATGCCA TTCATTGTGG TCACAAGGAC CTTGCACTGG 
    AATTGATATT AAAAGAGCCT GCCCTATCAA AAGCTGTGAA CAAATACAGT 
    GAGTCACCAA TGTTCATCGC GGTAATGAGA GATTTTACAG ATGTTTCTGA 
    GAAACTGTTG GGAATTCCTG GATCTAGCCA TGTTGGAACA TATGGCCACA 
    ATGCCTTGCA TGCTACTGTG AGAAATGGAA ATGCAGTTAT GGCTAAAAAA 
    ATTTTGGAGG GTCGTCCTTG GCTGGGGAAA GAACGAACCA GAGAGAGGAA 
    GACCCCAATC CTGATGACGG TAATTTGGGA CAAGATAGAC GTGCTTCGTG 
    TGTTGTTGGA ACATGATGTG CTTTTAGGGT ATGAATGCTA TGATGATGGT 
    GGTAATCTGA GCCCTCTTCT TGTTGCTGCT GCATATCGAG GTCATGTTGA 
    TGTTGCTCAA GAGCTTCTTA ACCACTGTCC AGATGCTCCC TATTGCGACA 
    GAAATGGTTG GACATGCCTT CATGAAGCTG TAAAGGAAGG TCAGACAGAG 
    TTTGTGGAAT TTATCCTAAG GACACCACAA CTTCGTAAGC TCATCAACAT 
    GCGAAATAAC AAGGACGGAC AAACTGCTCT GCATCAAGCT GTCCGGATGT 
    GCAATCCTAA AATTGTTGCC TCGTTGTTGT CTCATAAAGA CACAGACTTC 
    ACACTGAATG ATCACAAAAC TGGCCAGTCA GTAATTTGGC AATTATGTTT 
    GGGTTCAGAG CGTGCCAAGA CTTTAAACTG GAATGAAGTG TCCATGCTTA 
    TGACTAAAGC TGATCCTGAA GCTGCAACCA CGCTTCACCG TCAGTTCGCA 
    AGGAAACGAC TAACTGATGA ATTAGCAAGG AATGTTAAGT CACTCACTCA 
    AACATACACA AGCAACACTT CGCTAGTGGC TATTCTCATG GCGACGATAA 
    CCTTTGCCGC AGCCTTCACC CTGCCTGGGG GATACAGCAA CGATTCTGGA 
    AGCGAGGGAC TTCCTGTCAT GGCAAAGAAG TTAGCGTTTC AAGCATTCTT 
    GATCTCTGAC ACCGTAGCAA TGTGCTCCTC GCTTGCCGTC GCATTCATAT 
    GCATCCTAGC AAGGTGGGAG GATCTTGAAT TCTTGCTTTA CTACAGATCC 
    TTTACGAAGA AGCTTATGTG GTTTGCATAC ATGGCGACCA CTATAGCGTT 
    TGCAACGGGT TTATACACCG TGTTGGCCCC ACGAATGCTG TGGTTAGCTG 
    TTGGAATTTG TTTCCTTTCG GTTTTACTGC CCATTCTCAC TAAGCTGCTA 
    GGTGAGTGGC CTGTCGTGAA GCTCAGATTT CGTTTGGGTA AGACTTTCAA 
    GACTGATCTC CTTGATATGG TATGACGTCA TCAAATTTAT ATTATTTGTT 
    CTGCTTTCCA ACACTACATA TAAGTTCATG CAAAATGTAT GTTGTAATAT 
    ATACATTTTA TTTTGGTG

    Gene models with high sequence identity

    1. AT4G03500.1 [+] show detail - Ankyrin repeat family protein
      E-value: 2e-39; Score: 161.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ankyrin repeat 8.923
    ProfileScan Ankyrin repeat 8.683
    ProfileScan Ankyrin repeat-containing domain 33.315
    HMMSmart Ankyrin repeat 130
    HMMSmart Ankyrin repeat 3.8
    HMMSmart Ankyrin repeat 0.67
    HMMSmart Ankyrin repeat 1400
    HMMSmart Ankyrin repeat 5.7
    HMMSmart Ankyrin repeat 170
    HMMSmart Ankyrin repeat 0.91
    HMMSmart Ankyrin repeat 0.4
    HMMSmart Ankyrin repeat 0.23
    Gene3D Ankyrin repeat-containing domain 2.6e-17
    Gene3D Ankyrin repeat-containing domain 2.9e-23
    HMMPanther ANK REPEAT-CONTAINING 5.6e-46
    HMMPanther ANKYRIN REPEAT-CONTAINING 5.6e-46
    superfamily Ankyrin repeat-containing domain 6.2e-54

    See the detailed result >

    AT4G03500.1

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein
    Computational Description
    Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03460.1); Has 38634 Blast hits to 17459 proteins in 653 species: Archae - 49; Bacteria - 2374; Metazoa - 20314; Fungi - 3164; Plants - 3215; Viruses - 213; Other Eukaryotes - 9305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR