K06231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06231

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06231

Determination of introduced cDNA(s)

  • J023115P10 - Rice Full-length cDNAs - Original: J023115P10

    full reading [+] show sequence

    Nucleotide sequence: J023115P10 - full reading 
    GAGAAGAAAG AGAGAGAGAG AGATGGCGGC ATGAGCACCT CCTCCTGCAT 
    CGCCACCTCC CCCGATCCCC CGCAAACCCT AGCGACCGCG CCCCCCACCG 
    CCACCTCCCC TGCGGCGGCG CCCTGGTGAG GAGGGAGGAG GAGGAGGGGG 
    AGGTGGGGAG GGGGGAGGCG ACGATGCCGT CGCACGCGGA TCTGGACCGG 
    CAGATCTCGC AGCTGCGGGA GTGCAAGTTC CTGGGGGAGG CGGAGGTGAG 
    GGCGCTGTGC GAGCAGGCGA AGGCGATCCT CATGGAGGAG TGGAACGTGC 
    AGCCGGTGCG GTGCCCCGTC ACCGTCTGCG GCGACATCCA CGGCCAGTTC 
    TACGACCTCA TCGAGCTCTT CCGCATTGGC GGGGACTCCC CCGACACCAA 
    CTACCTCTTC ATGGGTGACT ACGTCGACCG TGGTTACTAT TCAGTGGAGA 
    CTGTTACATT ACTAGTGGCT CTTAAAGTCC GTTATAGAGA CAGAATCACA 
    ATATTGAGAG GAAATCACGA GAGCAGACAA ATCACCCAAG TGTATGGCTT 
    CTATGACGAA TGCTTACGGA AGTATGGAAA TGCAAATGTT TGGAAGTACT 
    TCACGGACTT GTTTGATTAT TTGCCTCTCA CAGCTCTTGT AGAAAACCAG 
    GTCTTTTGCC TCCATGGCGG TCTCTCGCCG TCATTGGATA CATTGGATAA 
    CATTCGTGCC CTCGATCGCA TACAGGAGGT CCCTCATGAA GGGCCCATGT 
    GTGATCTTTT GTGGTCTGAC CCGGACGATC GATGTGGGTG GGGAATTTCT 
    CCAAGAGGGG CAGGATACAC GTTTGGGCAA GATATTGCAC AACAATTCAA 
    CCATACTAAT GGCCTTACCC TTATTTCAGG GCCCATCAAC TTGTGATGGA 
    AGGCTTCAAT TGGTGCCAGG ACAAGAACGT TGTCACGGTG TTCAGCGCCC 
    CAAACTACTG TTACCGCTGT GGTAACATGG CAGCAATTCT AGAAATCGGG 
    GAGAACATGG ATCAGAACTT CCTACAGTTC GATCCAGCCC CACGACAAAT 
    AGAGCCGGAC ACAACGCGCA AGACCCCCGA CTACTTTTTG TAATCGTGGC 
    GTTGATCTTT TTTTTTTTAA CTCCCGCTGT TGATGTTCCT CTCTGCTGCG 
    TCTGGTTTTA TGTAGATCTT CGTCCTTAGA AAATGGGTTC CCTCCTCGAG 
    CCAAGCTGTG CCCCCCATTC TTTGTTTGGA AATTTTGTTG CAGCTCCTCA 
    ACTTCCATAG AACATGTTAA AACGTACATG GCGTTGTTTT TTCCTTTTTC 
    CTTTTTTATG TACCTCCCAT TTTGTATTAT TCTGAGACAG GAGAGATGGG 
    AAGCTGCAAT AGAGTTGTCT CGTGAC

    Gene models with high sequence identity

    1. AT1G10430.1 [+] show detail - protein phosphatase 2A-2
      E-value: 7e-168; Score: 154.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.7e-94
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-08
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-08
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-72
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-72
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-72
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-72
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.4e-72
    Gene3D no description 3.9e-17
    Gene3D no description 2.7e-98
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 6.9e-200
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 6.9e-200
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 9.2e-55
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 9.2e-55
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    superfamily Metallo-dependent phosphatases 4.1e-20
    superfamily Metallo-dependent phosphatases 1.2e-100
    HMMPfam Metallophosphoesterase 5.1e-40

    See the detailed result >

    AT1G10430.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-2
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-2 (PP2A-2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-2 (TAIR:AT1G59830.1); Has 6751 Blast hits to 6569 proteins in 471 species: Archae - 80; Bacteria - 183; Metazoa - 2378; Fungi - 1410; Plants - 970; Viruses - 5; Other Eukaryotes - 1725 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR