K06320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06320

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06320

Determination of introduced cDNA(s)

  • J033068O15 - Rice Full-length cDNAs - Original: J033068O15

    full reading [+] show sequence

    Nucleotide sequence: J033068O15 - full reading
    GAATCTCATC ACCATCGAAT CATCAGCATA CACACGATGG CGTCCCAACG 
    CCGGCGATCA TCTGCCACCG CCGTCCTCCT CTCCTTGCTA CTGCTCCTCC
    AGTTGGCCGC CGCCTATCCT CAAGGAAAGA GGCAGAACGT CGCCGTCTTC
    TGGGGCCGCA ACAAGGCCGA GGGCTCGCTC CGGCAAACCT GCGACACCGG
    CGACTACAAC ATCGTCATCA TCTCCTTCCT CAGCGTCTTC GGCCACGGCA
    AATACTGGCT CGACCTCTCC GGCCACGACC TTCGCGACGT CGGCGCCGAC
    ATCCGCCACT GCCAGTCCAA GGGCGTCTAC ATGCTCCTCT CCATCGGCGG
    CGACGGCTAC CAATACTCCC TCCCTTCCTC CAAGTCCGCC GCCGACGTCG
    CCGAAAACCT CTACTACTCC GTCCTCGGCG GCGACCGCCC CGGCGCCTTC
    CACCCCTTCG GCGACGACAC CATCGTCAAC GGCGTCGACT TCTTCATCGA
    CAACGGCCCA GCCGACCACT ACGACGACCT CGCCAACCGC ATCAACGACT
    ACAACCAGAA CATCCGCGAC CCCATCGGCA TCATGCTCAC GGCGACGGTG
    AGGTGCTCCT ACCCTGACCC GAGGATGAAG GCGGCGCTGG ACACCAAGCT
    GTTCCGGCGC ATCCACGTTC GCTTCTACGA CGACCCGAGC TGCTCCTATA
    ACCACGCCGG GCTCGCCGGC GTCATGGCGC AGTGGAACAA GTGGTCGGCG
    ACGTACCCCG ACGGGCAGAT CTTCCTGGGG GTCGTCGCGG CCAACTTGAC
    GGGGAAGAAC GACATGGTCG CCGTCGGCGA GCTCCGCGAC AAGCTGCTGC
    CGGCGGTGCA GAACACGGAT ACGTACGGAG GAGTGATGCT CTGGAACAGC
    TACTACGACT CGCTCACTCA CTACGGCCGA TACGTCAAGG ACTTGGCTTG
    ATATAATTAA TTAAACTCAA ATCAACCAAT AATTACTTGA GCCCGTGCAT
    GCATGCATGC AGCTCAATCA CTATCTCAGT AATTACGGCG TCATGTGTTT
    GATATAGGAA AGTAATCCCT ACGTAGGCCA TTCTCAACCC AATGACTAAG
    ATGGTGTCTA TAGCATTAAA TAAGGTGCCA CCTAGAATGA AAAATGATGT
    GACAAGTAAA TAAATGAGGA AAGAGAAGGA AATCATGTCT TGCATGAGAC
    ATGGTTTCTA CACAACATCC AAGACATCAT GTGAGATAAT GAGTATTAAA
    TTTAAGTATG GAATAGTAGT GTTTGCATTG G

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 4e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 9.5e-10
    Gene3D Glycoside hydrolase, subgroup, catalytic core 4.3e-87
    superfamily Glycoside hydrolase, catalytic core 1.3e-70

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR