K06326

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06326

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06326

Determination of introduced cDNA(s)

  • J013025B22 - Rice Full-length cDNAs - Original: J013025B22

    full reading [+] show sequence

    Nucleotide sequence: J013025B22 - full reading 
    GCCCATTCCA TTCGGCATCC GCTTCTCGGT GGGCAACGCG ACGGCGGCGG 
    AAAGCCAAGG CCAACGATGC AGCGCCTCTC CCGCTTCGTC CCCTCCTCCT 
    CCAGGAGAGT CACTGACCTA AAGGATGCTC TCTGGAGTGG TTCTTTGACT 
    TTCCAACATG CTCTTTCAAC ATTTGCAGCA GACGAGAACA CATCTGGTAG 
    AAAATTTGCA AGCTACACCG TGTTCAAGGG AAAGGCTGCA CTTTCTATGC 
    AACCCATACT GCCAAGCTTC AGCAAACTGG AATCTGGAGG ATCTCGTGTG 
    AACAAAAATG GATCGGTGAT GTTGACTTTT TTCCCGGCTG TGGGACAAAG 
    GAAATATGAT TATTCAAAGA AACAGCTCTT TGCTCTGTCA CCTACTGAAG 
    TCGGAAGCTT GATAAGTCTT GGGCCTGCTG AATCTTGTGA ATTTTTCCAT 
    GATCCCTCCA TGAAATCAAG TCATGAAGGC CAAGTGAAAA AATCGTTGTC 
    AGTCACTCCT CTCGGCAATG ACAGTGGATA CTTTCTGAAT ATAACTGTTC 
    TGAACAACTT GCAGAAGACA ACTGAGCGAC TTTCACTCCC AATCTCAAAA 
    GCTGAGTTTA CAGTTATGCG CACAGCATTG AGTTTCGCAT TGCCGCACAT 
    CTTGGGCTGG GACCAGGCCT TGACTAATCA CCAGCCAAGT CCATCACCAG 
    CTAGCAAGCC CAGGGTGGAG CGCCCACACC CAGATTCAGA GTGGGAAAGG 
    TGAAGCTCCC TTGTAGGCAC CAGCAGCATG GAGGGATTTG AACATCATCG 
    CTACCAAAAT TTGGATGCTG TTGCACTTTC TCCACGAAAT CGAATTAGGA 
    GATATCTATT AGATTCATGG AGCTAAAGAT CGAATGTCAC AGATTGAGCA 
    CACCATGAAG GGTTGTGTTT GTTCAATGCA TGTTTGAACT TCACCAGGCC 
    TACTAGTTGC AAAATTCTAC TCCAGTTAGC TATGCATTGC GTTTGACACC 
    TTGTGCCTTT TGAATGTGTG ACTTATGTTA TTTGCAAAAT GGTGGAGTCT 
    TACAAAACTA CTCAAACGTA GTTGAGTGGT TATGGCTTTA AAAAGCTAAA 
    CAAAAAACAT ATCTGTTTGT TAAGGCTCAA ACTTTTTATT CC

    Gene models with high sequence identity

    1. AT1G71260.1 [+] show detail - WHIRLY 2
      E-value: 2e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ssDNA-binding transcriptional regulator 4.9e-80
    HMMPfam Plant transcription factor 6e-58

    See the detailed result >

    AT1G71260.1

    Model type
    Protein coding
    Short Description
    WHIRLY 2
    Curator Summary
    Encodes WHY2, a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. WHY2 is a member of the Whirly family proteins present mainly in the plant kingdom performing various activities related to DNA metabolism. Crystal structure of Solanum tuberosum WHY2, a close homolog of Arabidopsis WHY2, reveal that Whirly proteins bind to single strand DNA to promote accurate repair of DNA double-strand breaks over an error-prone repair pathway.
    Computational Description
    WHIRLY 2 (ATWHY2); CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT1G14410.1); Has 105 Blast hits to 105 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR