K06339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06339

Determination of introduced cDNA(s)

  • J023006J20 - Rice Full-length cDNAs - Original: J023006J20

    full reading [+] show sequence

    Nucleotide sequence: J023006J20 - full reading 
    TGATCAAGGG CTGTGCCATG CAGGCTCTGC TTGAGCAAGG TGCTCAATTG 
    CATGCTCAAG TGATCAAAAC GGATTTGATC AGGGACTCCT TCGTTGGTTC 
    CACCCTAGTG GATATGTATG GGAAGTGTGG CCTTATAAGT TTGTCCATGC 
    AGTTATTTAA TGAGATTGAA TACAGAACAG ATATTGCTTG GAATGCGGTA 
    ATCAATGTAT TCGCACAACA TGGTCATGGA AGGGAAGCAA TCCAAGCTTT 
    CGATAGGATG ATCTATAGTG GTATCAGGCC AAATCACATT GCATTTGTCA 
    GCCTGCTCAC AGCATGCAGT CATGCTGGAT TAGTGGATGA AGGACTCAAG 
    TATTTTTACT CTATGAAGGA AGCCCATGGT ATTGAGCCTA AAGAGGAGCA 
    CTATTCCTGT ATCATTGATA CGTATGGTCG AGCTGGGAGA TTAGATGAAG 
    CATATAAGTT CATATCTGAG ATGCCCATCA AGCCCAATGC CTATGGCTGG 
    TGCTCTTTGC TTGGAGCTTG CCGTATGCGA GGGAGCAAGG AGCTGGGGGA 
    GGTTGCGGCA CAAAATCTTA TGAAGCTTGA ACCAGGTAAC ACTGGTATTC 
    ATGTGTCCCT TTCTGGGATC TATGCATCCC TGGGCCAATG GGAGGATGTG 
    AAGGCAGTCA GGAAGTTGAT GAGAGATAGC AGGATTAAGA AACTTCCTGG 
    TTTTAGCTGG GTCGATTCTA ACAAAAAAAC CCATGTGTTT GGATCCGAGG 
    ATTGGTCACA TCCACAGCAG AAGGACATAT ATGAAAAACT TGAGGAACTC 
    ACTACGAGGA TAAAGGAGGA AGGTTATATC CCGGATACAA GCTTCTTGCC 
    ATGTAATTTA GAAGACATCG CAAAAGAGAG GATTCTTCGT TATCACAGTG 
    AGAGAATAGC TGTAGCTTTT GCTTTGATAA GCATGCCAGC TACAAAACCA 
    ATCATTGTGA AGAAGAATTT GCGGATATGT ATAGACTGCC ACACTGCATT 
    CAAGTTCATT TGTAAGGTAG AAAGAAGGGA TATTATTGTG AGAGATAATT 
    CCAGGTTTCA CCATTTTGTG AATGGTAGGT GTTCCTGTGG AGATTACTGG 
    TGATTAACTC TTATCCTTTT TCGAGCTAGA AAGGTACAAT AGGAACTTCT 
    ACACTGCTGG CAACTGACCT TTTTACAGTG CTTAAATTTC CATGTTAGTT 
    GTTACTGTTT TTTTTATGTA CTTGTATACA GTTGCTAGTT GT

    Gene models with high sequence identity

    1. AT3G02010.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF48452 3.9e-23
    HMMPanther PTHR10483:SF4 0
    HMMPanther PTHR10483 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    HMMPfam Pentatricopeptide repeat 150
    HMMPfam Pentatricopeptide repeat 0.0053
    HMMPfam Pentatricopeptide repeat 1.3
    HMMPfam Pentatricopeptide repeat 0.095
    HMMTigr Pentatricopeptide repeat 0.00380000071256818
    HMMTigr Pentatricopeptide repeat 1.30000000295891
    HMMTigr Pentatricopeptide repeat 0.470000004146071

    See the detailed result >

    AT3G02010.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR